##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062064_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 948404 Sequences flagged as poor quality 0 Sequence length 25 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.318256776647928 32.0 32.0 32.0 32.0 32.0 2 30.91839026406468 32.0 32.0 32.0 32.0 32.0 3 30.934874800190634 32.0 32.0 32.0 32.0 32.0 4 30.930623447391618 32.0 32.0 32.0 32.0 32.0 5 30.908602241238967 32.0 32.0 32.0 32.0 32.0 6 34.58003867550116 36.0 36.0 36.0 32.0 36.0 7 34.485097068337964 36.0 36.0 36.0 32.0 36.0 8 34.46981033399268 36.0 36.0 36.0 32.0 36.0 9 34.54663624362613 36.0 36.0 36.0 32.0 36.0 10 34.268904390955754 36.0 36.0 36.0 32.0 36.0 11 34.524140556134306 36.0 36.0 36.0 32.0 36.0 12 34.34096439913792 36.0 36.0 36.0 32.0 36.0 13 34.43892370761827 36.0 36.0 36.0 32.0 36.0 14 34.36894719971658 36.0 36.0 36.0 32.0 36.0 15 34.337373102601845 36.0 36.0 36.0 32.0 36.0 16 34.33410656218236 36.0 36.0 36.0 32.0 36.0 17 34.26282048578454 36.0 36.0 36.0 32.0 36.0 18 34.279067781240904 36.0 36.0 36.0 32.0 36.0 19 34.217684657593175 36.0 36.0 36.0 32.0 36.0 20 34.19918410297721 36.0 36.0 36.0 32.0 36.0 21 34.161832931957264 36.0 36.0 36.0 32.0 36.0 22 34.09137139868663 36.0 36.0 36.0 32.0 36.0 23 34.08573666918318 36.0 36.0 36.0 32.0 36.0 24 34.041830274861766 36.0 36.0 36.0 32.0 36.0 25 33.70666930970346 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 4 12.0 5 69.0 6 183.0 7 25.0 8 164.0 9 129.0 10 79.0 11 21.0 12 32.0 13 48.0 14 101.0 15 178.0 16 269.0 17 403.0 18 493.0 19 671.0 20 1049.0 21 1567.0 22 2299.0 23 3592.0 24 5073.0 25 7265.0 26 9989.0 27 12900.0 28 17098.0 29 23080.0 30 30745.0 31 41699.0 32 59424.0 33 85984.0 34 196382.0 35 447381.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.86493046658927 20.14850383754414 12.315780483407195 24.670785212459393 2 13.411506934822997 20.770728024614034 44.43579832180868 21.381966718754285 3 18.85172438517244 25.83572684827857 29.43833588501006 25.874212881538934 4 10.754813081500494 17.123255168981157 39.42587849216652 32.696053257351835 5 11.767628132445806 39.94015405531689 35.44770019227909 12.844517619958213 6 30.81392343230563 39.04811038982277 18.281969233236374 11.85599694463523 7 27.91074220007536 31.36129649899252 22.156335199115908 18.571626101816207 8 24.157942625044594 40.014693122731906 20.051573705221337 15.775790547002162 9 26.329329597733302 14.738800061650068 20.952683572579232 37.979186768037394 10 15.977933801404212 28.380509950905346 32.86987277622341 22.771683471467032 11 35.25160257594748 21.524830820140878 25.881113202945087 17.342453400966562 12 24.54122459063645 24.713743782604702 32.10050034788907 18.644531278869778 13 29.659108544932238 21.996361881897354 26.25716195115462 22.087367622015787 14 20.025292483930933 24.629981305096393 26.573259004113726 28.771467206858954 15 21.6164196989933 35.3080541199698 22.27998585236841 20.795540328668487 16 20.709788703847583 27.93002398405567 31.035811404249568 20.324375907847177 17 19.853217517619388 30.803207594177685 28.831820888211375 20.511753999991555 18 20.576102583373267 26.75101280814384 33.77533075917861 18.897553849304284 19 24.29130484340106 25.96990446599319 26.847356667328043 22.891434023277707 20 24.313391504037757 27.40365740916632 28.098286539265228 20.1846645475307 21 23.619704739179944 26.532949051731325 25.782924515259577 24.064421693829157 22 23.614661547002612 30.172630343508633 26.879713929271798 19.332994180216957 23 20.16546105914072 29.675356537980598 29.153014546433038 21.00616785644565 24 23.2812251010206 27.068877634476912 29.86885526167211 19.78104200283037 25 21.32724078070504 28.644002511595023 29.40128006922716 20.627476638472782 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 290.0 1 290.0 2 311.0 3 332.0 4 332.0 5 332.0 6 732.0 7 1132.0 8 1132.0 9 1132.0 10 1477.5 11 1823.0 12 1823.0 13 1823.0 14 2945.0 15 4067.0 16 4067.0 17 4067.0 18 7302.0 19 10537.0 20 10537.0 21 10537.0 22 18495.0 23 26453.0 24 26453.0 25 26453.0 26 41665.5 27 56878.0 28 56878.0 29 56878.0 30 75699.5 31 94521.0 32 94521.0 33 94521.0 34 104246.0 35 113971.0 36 113971.0 37 113971.0 38 115653.5 39 117336.0 40 117336.0 41 117336.0 42 117796.5 43 118257.0 44 118257.0 45 118257.0 46 117156.0 47 116055.0 48 116055.0 49 116055.0 50 104631.5 51 93208.0 52 93208.0 53 93208.0 54 74496.0 55 55784.0 56 55784.0 57 55784.0 58 49571.5 59 43359.0 60 43359.0 61 43359.0 62 39602.0 63 35845.0 64 35845.0 65 35845.0 66 30608.0 67 25371.0 68 25371.0 69 25371.0 70 19112.0 71 12853.0 72 12853.0 73 12853.0 74 10790.5 75 8728.0 76 8728.0 77 8728.0 78 7690.5 79 6653.0 80 6653.0 81 6653.0 82 4622.5 83 2592.0 84 2592.0 85 2592.0 86 1992.0 87 1392.0 88 1392.0 89 1392.0 90 940.5 91 489.0 92 489.0 93 489.0 94 300.5 95 112.0 96 112.0 97 112.0 98 239.0 99 366.0 100 366.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0011598432735416553 2 2.1088059518939185E-4 3 8.435223807575674E-4 4 0.010860350652253681 5 0.03194841017119287 6 0.05936288754581381 7 0.10449133491634366 8 0.10775998414177924 9 0.11830401390124884 10 0.1322221331837487 11 0.14076279728891908 12 0.13317109586210096 13 0.12768820038717676 14 0.11461360348543448 15 0.1316949316957752 16 0.11682784973492308 17 0.12146722282908973 18 0.10944702890329439 19 0.09363098426408999 20 0.08941337236030215 21 0.0880426484915711 22 0.09974652152458234 23 0.07897478289842726 24 0.08698824551562415 25 0.08424679777816205 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 948404.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.84604926771441 #Duplication Level Percentage of deduplicated Percentage of total 1 79.95981284962727 38.2576114504049 2 12.745771481246523 12.19669620493501 3 3.3499956150625563 4.808521657347311 4 1.2373837035216289 2.368156865670511 5 0.6126668060666336 1.4656843093878689 6 0.3718896712424423 1.0676070919452008 7 0.23904511953197893 0.8006155196433622 8 0.16716770105752307 0.6398651248615044 9 0.1291376779240657 0.5560854930245775 >10 0.894402306530069 8.630995229172314 >50 0.13160592775614707 4.416685641568372 >100 0.13804042610617528 13.58240494514256 >500 0.01597895607255859 5.270584317224753 >1k 0.007101758254470484 5.93848614967184 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTAGGACGTGGAATATGGCAAGA 4678 0.4932497121479876 No Hit GTCCTACAGTGGACATTTCTAAATT 4656 0.4909300256009042 No Hit GTCCTAAAGTGTGTATTTCTCATTT 4053 0.4273495261513026 No Hit CTTTAGGACGTGAAATATGGCGAGG 3376 0.35596644467969346 No Hit GTCCTACAGTGTGCATTTCTCATTT 3172 0.3344566239703755 No Hit CTGTAGGACCTGGAATATGGCGAGA 2443 0.25759064702384216 No Hit GCGCAAGACGGACCAGAGCGAAAGC 1761 0.18568036406425953 No Hit GTATCAACGCAGAGTACTTTTTTTT 1663 0.17534721489997931 No Hit GATATACACTGTTCTACAAATCCCG 1595 0.16817727466354002 No Hit CTGAAGGACCTGGAATATGGCGAGA 1553 0.1637487821645628 No Hit GTCCTTCAGTGTGCATTTCTCATTT 1508 0.15900396877280146 No Hit ATTTAGAAATGTCCACTGTAGGACG 1467 0.1546809165714189 No Hit GTTCAAAGCAGGCCCGAGCCGCCTG 1421 0.14983066288206293 No Hit GAATAGGACCGCGGTTCTATTTTGT 1408 0.14845993901333188 No Hit GGGTAGGCACACGCTGAGCCAGTCA 1389 0.14645657335903264 No Hit TTGTAGAACAGTGTATATCAATGAG 1293 0.13633430478994182 No Hit GATTAAGAGGGACGGCCGGGGGCAT 1271 0.1340146182428585 No Hit GTCTTGCGCCGGTCCAAGAATTTCA 1246 0.13137861080299112 No Hit GTGTAGCGCGCGTGCAGCCCCGGAC 1242 0.13095684961261234 No Hit TCGTAGTTCCGACCATAAACGATGC 1230 0.129691566041476 No Hit GAATATGGCAAGAAAACTGAAAATC 1205 0.1270555586016086 No Hit ATCAGATACCGTCGTAGTTCCGACC 1198 0.12631747651844571 No Hit GTGTATATCAATGAGTTACAATGAA 1170 0.12336514818579424 No Hit GAACTACGACGGTATCTGATCGTCT 1158 0.12209986461465788 No Hit TTTCTAAATTTTCCACCTTTTTCAG 1155 0.1217835437218738 No Hit GTATCTGATCGTCTTCGAACCTCCG 1151 0.12136178253149502 No Hit TATCAACGCAGAGTACTTTTTTTTT 1123 0.11840945419884354 No Hit GAATAACGCCGCCGCATCGCCAGTC 1094 0.11535168556859735 No Hit CTGTAGGACATGGAATATGGCAAGA 1089 0.11482448408062387 No Hit ACCATACTCCCCCCGGAACCCAAAG 1075 0.11334831991429813 No Hit CTCCTGGTGGTGCCCTTCCGTCAAT 1049 0.11060687217683604 No Hit GTGTATATCAATGAGTTACAATGAG 1034 0.1090252677129156 No Hit GTGCATGGCCGTTCTTAGTTGGTGG 995 0.10491309610672246 No Hit GCCATGCACCACCACCCACGGAATC 964 0.10164444688128688 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGGTC 40 2.757641E-4 16.626617 10 CGACCAT 200 0.0 15.676524 10 AGCCCCG 170 0.0 15.647756 16 GGTATCA 675 0.0 15.334135 1 CCGACCA 205 0.0 15.29417 9 CGGACAT 135 0.0 14.779215 5 TCCAACG 225 0.0 14.353161 18 TGTGCGA 40 0.005273684 14.251386 10 CCAACGA 140 0.0 14.248376 19 GTTTTCG 75 9.65063E-7 13.934689 15 CGAACGA 75 9.656378E-7 13.933953 16 AGAACCG 55 1.9572629E-4 13.819527 5 GCGTCCC 90 3.630703E-8 13.722833 16 GAACGCC 105 1.366061E-9 13.572749 14 CCCCCGT 85 2.7059468E-7 13.407406 2 CGGTTCT 270 0.0 13.371671 12 AACCGCG 50 0.0014976949 13.301293 7 GAACCGC 50 0.0014976949 13.301293 6 CATCGCC 165 0.0 13.243711 15 ATCGCCA 165 0.0 13.243012 16 >>END_MODULE