##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062043_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 110542 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.73022923413725 32.0 32.0 32.0 32.0 32.0 2 31.394881583470536 32.0 32.0 32.0 32.0 32.0 3 31.594479926181904 32.0 32.0 32.0 32.0 32.0 4 31.718288071502233 32.0 32.0 32.0 32.0 32.0 5 31.73450815074813 32.0 32.0 32.0 32.0 32.0 6 35.38318467188942 36.0 36.0 36.0 36.0 36.0 7 35.365390530296175 36.0 36.0 36.0 36.0 36.0 8 35.36249570299072 36.0 36.0 36.0 36.0 36.0 9 35.31568996399559 36.0 36.0 36.0 36.0 36.0 10 35.29444916864178 36.0 36.0 36.0 36.0 36.0 11 35.35778256228402 36.0 36.0 36.0 36.0 36.0 12 35.30942989994753 36.0 36.0 36.0 36.0 36.0 13 35.27510810370719 36.0 36.0 36.0 36.0 36.0 14 35.25668976497621 36.0 36.0 36.0 36.0 36.0 15 35.228012881981506 36.0 36.0 36.0 36.0 36.0 16 35.22771435291563 36.0 36.0 36.0 36.0 36.0 17 35.209884025981076 36.0 36.0 36.0 36.0 36.0 18 35.18031155578875 36.0 36.0 36.0 36.0 36.0 19 35.114463280924895 36.0 36.0 36.0 36.0 36.0 20 35.035959182934995 36.0 36.0 36.0 36.0 36.0 21 34.989623853377 36.0 36.0 36.0 36.0 36.0 22 34.87940330372166 36.0 36.0 36.0 36.0 36.0 23 34.87619185467967 36.0 36.0 36.0 36.0 36.0 24 34.857891118307975 36.0 36.0 36.0 36.0 36.0 25 34.72230464438856 36.0 36.0 36.0 32.0 36.0 26 34.67527274701018 36.0 36.0 36.0 32.0 36.0 27 34.54111559407284 36.0 36.0 36.0 32.0 36.0 28 34.445613431998694 36.0 36.0 36.0 32.0 36.0 29 34.30863382243853 36.0 36.0 36.0 32.0 36.0 30 34.26083298655715 36.0 36.0 36.0 32.0 36.0 31 34.15462900978814 36.0 36.0 36.0 32.0 36.0 32 34.0976009118706 36.0 36.0 36.0 32.0 36.0 33 34.11848890014655 36.0 36.0 36.0 32.0 36.0 34 33.98644858967632 36.0 36.0 36.0 32.0 36.0 35 33.869470427529805 36.0 36.0 36.0 32.0 36.0 36 33.66941976805196 36.0 36.0 36.0 27.0 36.0 37 33.52302292341373 36.0 36.0 36.0 21.0 36.0 38 33.39909717573411 36.0 36.0 36.0 21.0 36.0 39 32.9826762678439 36.0 36.0 36.0 14.0 36.0 40 32.96321760055002 36.0 36.0 36.0 14.0 36.0 41 32.89860867362631 36.0 36.0 36.0 14.0 36.0 42 32.80404733042644 36.0 36.0 36.0 14.0 36.0 43 32.74026162001773 36.0 36.0 36.0 14.0 36.0 44 32.62737240144018 36.0 36.0 36.0 14.0 36.0 45 32.36034267518228 36.0 36.0 36.0 14.0 36.0 46 32.148721752817934 36.0 36.0 36.0 14.0 36.0 47 32.07990627996599 36.0 36.0 36.0 14.0 36.0 48 31.96972191565197 36.0 36.0 36.0 14.0 36.0 49 31.87333321271553 36.0 36.0 36.0 14.0 36.0 50 31.56368620072009 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 1.0 19 3.0 20 15.0 21 27.0 22 47.0 23 106.0 24 253.0 25 567.0 26 1156.0 27 1948.0 28 2958.0 29 3617.0 30 4528.0 31 5587.0 32 7244.0 33 9307.0 34 16316.0 35 56861.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.10250052037612 21.39515099957465 13.517109061784483 22.98523941826475 2 10.613544663373682 22.366968825200384 46.57583817329787 20.443648338128064 3 18.222937887861626 31.35550288578097 29.63036673843426 20.791192487923144 4 10.315536176294984 19.04705903638436 38.58352481409781 32.05387997322285 5 8.890738361889598 41.711747571058964 35.40916574695591 13.988348320095529 6 27.48005283059832 38.10859220929601 20.68173183043549 13.729623129670172 7 24.215230410160842 33.52752799840785 24.39525248321905 17.861989108212263 8 24.576179189810208 39.08469179135532 21.003781368167758 15.335347650666714 9 28.252609867742578 14.627924227895281 21.950932677172478 35.16853322718966 10 16.54484268422862 29.232327983933708 34.15624830381213 20.066581028025546 11 30.224710969586223 22.317309258019577 28.164860415045865 19.29311935734834 12 27.385970943170925 25.525139765880844 32.88885672414105 14.200032566807186 13 30.873333212715533 23.996309095185538 26.570896129977744 18.559461562121186 14 20.192325089106404 25.861663440140397 29.446726131244233 24.499285339508965 15 21.366539414883032 36.15277451104558 26.090535723978213 16.390150350093176 16 15.98668379439489 28.418157804273488 36.972372491903535 18.622785909428092 17 17.74167284832914 31.14834180673409 33.1928135912142 17.917171753722567 18 18.907745472309166 24.341879104774655 41.003419514754576 15.746955908161603 19 22.434006983770875 25.5893687467207 33.671364730147815 18.305259539360605 20 23.88163667779376 26.40106385865878 34.57450176857456 15.142797694972906 21 20.19594362323823 25.554992672468384 31.5943261384813 22.654737565812088 22 22.433102350237917 31.42877820195039 29.759729333646938 16.378390114164752 23 15.434857339291852 32.194098170831 34.69179135532196 17.679253134555193 24 21.421722060393332 28.50862115756907 34.84376978885853 15.225886993179063 25 19.34468346872682 27.955890068933076 34.11011199363138 18.589314468708725 26 15.783141249479835 29.999457219880227 36.09940113260118 18.118000398038756 27 17.895460548931627 30.36311990012846 33.27151670858136 18.46990284235856 28 16.148613196793978 30.56756707857647 33.1620560510937 20.12176367353585 29 19.502994336994085 27.57413471802573 33.0435490582765 19.879321886703696 30 16.745974307942827 28.46842771847295 35.90103130088656 18.884566672697666 31 22.034158962204412 25.754916683251615 33.39002370139856 18.82090065314541 32 16.24374666413367 30.51808831112438 34.83503858296921 18.403126441772734 33 15.007870311736715 32.03578730256373 37.07459608112754 15.881746304572017 34 16.342204772846518 30.4011145085126 36.48567965117331 16.77100106746757 35 15.643827685404643 32.282752257060665 35.863291780499715 16.210128277034975 36 16.503229541712653 30.449964719292215 36.46577771344828 16.58102802554685 37 16.422717157279585 31.443252338477684 32.06473557561832 20.069294928624416 38 18.583886667510992 33.509435327748726 31.49481644985616 16.411861554884116 39 20.95873929130368 28.99648094372224 31.983607892094334 18.061171872879747 40 20.86356317055961 29.347216442619096 33.94637332416638 15.842847062654918 41 20.200649532752553 28.669000642295618 34.182791905265915 16.947557919685906 42 18.639912427512957 32.8514434080896 34.11527361878828 14.393370545609162 43 16.38094031862634 33.05770918335037 33.686457928114564 16.874892569908717 44 15.514121840453058 33.01579547304999 33.21482205214497 18.255260634351988 45 17.617897431722167 32.63766385323093 31.84881627631377 17.895622438733138 46 16.60922191765951 30.512660460824492 33.68342967767616 19.194687943839842 47 20.88727259568848 30.34530174324459 31.535810242353516 17.23161541871342 48 16.361646115850515 32.68258261789956 31.140140583866327 19.815630682383592 49 19.043224954314354 31.76011869221444 30.912446398523585 18.28420995494762 50 16.360741457766036 36.60337075602276 29.24126326454916 17.79462452166204 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 229.0 1 161.5 2 94.0 3 266.0 4 438.0 5 403.0 6 368.0 7 310.5 8 253.0 9 313.0 10 373.0 11 539.0 12 705.0 13 1055.5 14 1406.0 15 1729.0 16 2052.0 17 1896.0 18 1740.0 19 1576.5 20 1413.0 21 1387.5 22 1362.0 23 1349.5 24 1337.0 25 1359.5 26 1382.0 27 1780.5 28 2179.0 29 3033.5 30 3888.0 31 5196.5 32 6505.0 33 8431.5 34 10358.0 35 11771.0 36 13184.0 37 12429.0 38 11674.0 39 10121.5 40 8569.0 41 7705.0 42 6841.0 43 6373.5 44 5906.0 45 5855.0 46 5804.0 47 5947.5 48 6091.0 49 5787.0 50 5483.0 51 4645.5 52 3808.0 53 2938.5 54 2069.0 55 1784.0 56 1499.0 57 1355.5 58 1212.0 59 1034.0 60 856.0 61 710.5 62 565.0 63 466.5 64 368.0 65 289.5 66 211.0 67 172.5 68 134.0 69 104.5 70 75.0 71 61.5 72 48.0 73 42.5 74 37.0 75 23.0 76 9.0 77 5.5 78 2.0 79 4.0 80 6.0 81 5.0 82 4.0 83 3.5 84 3.0 85 2.0 86 1.0 87 0.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04070850898301098 2 0.0036185341318231987 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 9.046335329557997E-4 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0018092670659115993 31 0.0 32 9.046335329557997E-4 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 9.046335329557997E-4 40 0.0 41 9.046335329557997E-4 42 0.004523167664778998 43 0.004523167664778998 44 0.0036185341318231987 45 9.046335329557997E-4 46 9.046335329557997E-4 47 9.046335329557997E-4 48 0.002713900598867399 49 0.0036185341318231987 50 0.002713900598867399 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 110542.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 69.46228582801108 #Duplication Level Percentage of deduplicated Percentage of total 1 85.2887933841245 59.24354543974236 2 9.974604414924789 13.857176457816939 3 2.2960213583382174 4.784606755803225 4 0.8217750862798724 2.283295037180438 5 0.41153871198801845 1.4293209820701636 6 0.21228104447483234 0.884731595230772 7 0.15497818584358924 0.753559732952181 8 0.10679169108549846 0.5934395976190046 9 0.09507065182001694 0.5943442311519603 >10 0.5469818323891384 7.190027319932696 >50 0.057302858631243084 2.9635794539631997 >100 0.03255844240411539 4.855168171373776 >500 0.0013023376961646155 0.5672052251632863 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 627 0.5672052251632863 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 439 0.39713412096759604 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 363 0.32838197246295525 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 349 0.3157171030015741 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 336 0.3039568670731487 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 336 0.3039568670731487 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 329 0.29762443234245806 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 314 0.28405492934812104 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 291 0.2632483580901377 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG 258 0.2333954515025963 No Hit ATTTAGAAATGTCCACTGTAGGACGTGGAATATGGCAAGAAAACTGAAAA 217 0.1963054766514085 No Hit CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA 199 0.1800220730582041 No Hit TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 187 0.16916647066273452 No Hit GTCCTTCAGTGTGCATTTCTCATTTTTCACGTTTTTTAGTGATTTCGTCA 186 0.16826183712977874 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 184 0.16645257006386713 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 179 0.16192940239908815 No Hit TTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCT 155 0.14021819760814894 No Hit ATACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 130 0.11760235928425394 No Hit AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 127 0.11488845868538657 No Hit TATCAACGCAGAGTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAA 123 0.11126992455356335 No Hit GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTT 120 0.10855602395469595 No Hit GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG 118 0.10674675688878436 No Hit GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT 114 0.10312822275696115 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 9.046335329557996E-4 0.0 15 0.0 0.0 0.0 9.046335329557996E-4 0.0 16 0.0 0.0 0.0 9.046335329557996E-4 0.0 17 0.0 0.0 0.0 9.046335329557996E-4 0.0 18 0.0 0.0 0.0 9.046335329557996E-4 0.0 19 0.0 0.0 0.0 0.0018092670659115991 0.0 20 0.0 0.0 0.0 0.0036185341318231983 0.0 21 0.0 0.0 0.0 0.006332434730690597 0.0 22 0.0 0.0 0.0 0.0072370682636463965 0.0 23 0.0 0.0 0.0 0.009950968862513796 0.0 24 0.0 0.0 0.0 0.017188037126160193 0.0 25 0.0 0.0 0.0 0.02080657125798339 0.0 26 0.0 0.0 0.0 0.028948273054585586 0.0 27 0.0 0.0 0.0 0.036185341318231985 0.0 28 0.0 0.0 0.0 0.055182645510303774 0.0 29 0.0 0.0 0.0 0.07237068263646397 0.0 30 0.0 0.0 0.0 0.09770042155922636 0.0 31 0.0 0.0 0.0 0.12664869461381195 0.0 32 0.0 0.0 0.0 0.1682618371297787 0.0 33 0.0 0.0 0.0 0.2089703461127897 0.0 34 0.0 0.0 0.0 0.2551066562935355 0.0 35 0.0 0.0 0.0 0.31843100360044146 0.0 36 0.0 0.0 0.0 0.3962294874346402 0.0 37 0.0 0.0 0.0 0.4812650395324854 0.0 38 0.0 0.0 0.0 0.6422898083986177 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATATAC 30 2.499295E-6 44.019466 1 CCTACAC 40 1.8053515E-5 32.99966 3 GGATAAT 35 3.1993145E-4 31.428247 41 TATATAC 30 0.0057230284 29.333035 3 CTGTTCT 30 0.0057230284 29.333035 9 ACTGTTC 30 0.0057230284 29.333035 8 TAGGACC 125 0.0 28.15971 4 TGGATAA 40 6.991923E-4 27.499718 40 ATGGGCA 45 0.0013902831 24.444193 5 GATAATT 45 0.0013902831 24.444193 42 ATATACA 55 1.5809902E-4 23.999754 2 TCACAGA 60 2.8501687E-4 21.999775 36 CACAGAA 60 2.8501687E-4 21.999775 37 GACATGA 50 0.00256592 21.999775 7 ATACACT 50 0.00256592 21.999775 4 TGTAGGA 490 0.0 21.999773 2 CTGTAGG 480 0.0 20.634125 1 AATCACA 75 5.4156204E-5 20.533123 34 GTAGGAC 550 0.0 20.39979 3 AGGACCT 305 0.0 20.196512 5 >>END_MODULE