FastQCFastQC Report
Thu 2 Feb 2017
SRR4062041_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062041_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3250
Sequences flagged as poor quality0
Sequence length25
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGAGCTATCCAGAGTGCTCTC120.3692307692307692No Hit
TATATACACCACCCAACTAAGCCAC90.2769230769230769No Hit
GTCTTGATTTCTGTTAGTAGGATTC90.2769230769230769No Hit
GCACAGCAGCATCGTTTGCATTTTA90.2769230769230769No Hit
GTACATGGGAGGAGGAGAAATCGGA80.24615384615384617No Hit
CTGTTATAGTTGTCACTGTTAAGAG80.24615384615384617No Hit
GGATTAGAGTGATTGTGTTGATAAT80.24615384615384617No Hit
GCTGTATGCAGCATGTCCTGAAGCT80.24615384615384617No Hit
GTCCACCATCAGCAGAGGCAGGGGG80.24615384615384617No Hit
GTTGAGGGATGACGTTATTGAAGGA80.24615384615384617No Hit
GTATCAACGCAGAGTACATGGGAGG80.24615384615384617No Hit
GAGGAGGAGAAATCGGAATTGTGGG70.21538461538461537No Hit
GACTTGCATAGAGATTTCTGTGAGT70.21538461538461537No Hit
GGTATCAACGCAGAGTACATGGGGC70.21538461538461537No Hit
GGTATCAACGCAGAGTACATGGGAG70.21538461538461537No Hit
TATCAACGCAGAGTACATGGGAGGA70.21538461538461537No Hit
GTTCTAAGCAGTCGGCCACGAGGAC60.1846153846153846No Hit
GTTATTCACAACCCAACCATTTCGT60.1846153846153846No Hit
GTATCAACGCAGAGTACATGGGGCC60.1846153846153846No Hit
CTAATAAAGGCGTGTGGGAGAGATG60.1846153846153846No Hit
TCTGATGACTTAGAAATTTGTCGGA60.1846153846153846No Hit
CTCTGGCACTGTCCACCATCAGCAG60.1846153846153846No Hit
GTCCAATATGTAGTTGGTAAATCTG50.15384615384615385No Hit
GGCTAACAGAGTCACCTGAAGAGCA50.15384615384615385No Hit
GCTTATAGAGGCTAACAGAGTCACC50.15384615384615385No Hit
ACCCGGGCCTGACCCGGGGCACAAG50.15384615384615385No Hit
GACTAAGGAAAAAACATCCAAGACT50.15384615384615385No Hit
GTGCTGTGTTGAGGCAGGAAGAGAA50.15384615384615385No Hit
TATCAACGCAGAGTACTTTTTTTTT50.15384615384615385No Hit
CTGTAGGACCTGGAATATGGCGAGA50.15384615384615385No Hit
GTTTATATGGACCTCTTGTATTTTA50.15384615384615385No Hit
ACTATGGGTCGACGGAGAGCAATTT50.15384615384615385No Hit
CTCTTAGACACTAACATTTCTCCGT40.12307692307692308No Hit
ACTTATGAAAGTCCTTCTTGATGTC40.12307692307692308No Hit
GCTTAGAACTGCCTGTGACTCCAGC40.12307692307692308No Hit
CCTCTGCACAGCACAGCAGCATCGT40.12307692307692308No Hit
ACGGAGAGCAATTTGCAAAGTTGAG40.12307692307692308No Hit
CTCACTACCAGCCCTTCCACTGCAG40.12307692307692308No Hit
CCGTGAGACTGCCCACACAGCCAGA40.12307692307692308No Hit
GAGTACGTCTGATGACTTAGAAATT40.12307692307692308No Hit
GTATAGCCTTGGCTGTCCTCAGCTC40.12307692307692308No Hit
GTCTAAGAGGAGCGAGGTTAACGAA40.12307692307692308No Hit
TTGCAGGGCAGGTACCCAGATAACT40.12307692307692308No Hit
CTCTTTAGCAGTGCTCTCCTGTCAT40.12307692307692308No Hit
GTGAATAACTAACGAAGGATTAGAG40.12307692307692308No Hit
AGCCTACACTGTGAACCAGACAGAA40.12307692307692308No Hit
TCGTAGTTGAGAGCACGCACTGTTC40.12307692307692308No Hit
GTCTTAGGCGAAAGACTTGCATAGA40.12307692307692308No Hit
GTATGTGGGATTTAATAACAACACG40.12307692307692308No Hit
GCGTAAGAACGCCAGCCTGGCTCTC40.12307692307692308No Hit
ACCTACAACTACGATCGCCACATCC40.12307692307692308No Hit
CCAGGGTACCTTGCCAGCAGACACG40.12307692307692308No Hit
TATATATACACCACCCAACTAAGCC40.12307692307692308No Hit
TGCTTATAGAGGCTAACAGAGTCAC40.12307692307692308No Hit
GGGGAAAACAGGTCAGGATCCGGTG40.12307692307692308No Hit
GGTATGCAGTGTTCCAGTGGGCAAC40.12307692307692308No Hit
TCCTACCACTGTGGAGGTGTTAGCC40.12307692307692308No Hit
GCATACAGCTGTGCACACACACAGA40.12307692307692308No Hit
GTGCCAGAGGCAGGACCTGCCTGAG40.12307692307692308No Hit
ATCAGAACCTTGCCTAACAAACATT40.12307692307692308No Hit
GCATAGAGATTTCTGTGAGTACGTC40.12307692307692308No Hit
GCTGTACATAGGGAAGCAGACTACC40.12307692307692308No Hit
GTGTATTAATGAGCTGGCTGAAGTG40.12307692307692308No Hit
GATCGAGACGGTCCATAAGATCGGA40.12307692307692308No Hit
CCTTTAATCCTAGCACTTAGGGAGG40.12307692307692308No Hit
GAGTATTCTCTGCAGGCAAGCTCTC40.12307692307692308No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)