FastQCFastQC Report
Thu 2 Feb 2017
SRR4062041_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062041_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3250
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTAGAGTGATTGTGTTGATAATTGATTGGATTTGGTACTCTACCCGA90.2769230769230769No Hit
CCCACATACACCGCCACATCACTTTCGTTCTCAAATCACTTGGCTTAAAA70.21538461538461537No Hit
GTCTTAGGCGAAAGACTTGCATAGAGATTTCTGTGAGTACGTCTGATGAC70.21538461538461537No Hit
GCTTATAGAGGCTAACAGAGTCACCTGAAGAGCAAGCTCTTAACAGTGAC70.21538461538461537No Hit
ATATTGGACTTGGGAGGTGAAAAACCAAAGGTTCAACTTGTTTCAAACTT70.21538461538461537No Hit
CTATAACAGCTAGCTTCAGAGATTACCAGATGGCGAAAGGCAAACGTAAG70.21538461538461537No Hit
GTCTTGATTTCTGTTAGTAGGATTCTTACGTTTGCCTTTCGCCATCTGGT60.1846153846153846No Hit
TTCCAGAGGGGCGGATCAACTATGGGTCGACGGAGAGCAATTTGCAAAGT60.1846153846153846No Hit
CTATGTAGTTGTGGCTAGCCTTGAACTTCCATGTTGACCAGGCTGGCTTC60.1846153846153846No Hit
CTCTAATCCTTCGTTAGTTATTCACAACCCAACCATTTCGTTAACCTCGC60.1846153846153846No Hit
GTTGAGGGATGACGTTATTGAAGGACGGAGAAATGTTAGTGTCTAAGAGG60.1846153846153846No Hit
ACTATGGGTCGACGGAGAGCAATTTGCAAAGTTGAGGGATGACGTTATTG60.1846153846153846No Hit
GTATCAACGCAGAGTACATGGGAGGAGGAGAAATCGGAATTGTGGGAAAG60.1846153846153846No Hit
ATCCAGAGTGCTCTCGCTCGTGTTGTTATTAAATCCCACATACACCGCCA60.1846153846153846No Hit
GCATACAGCTGTGCACACACACAGATAAGATAAAGGAAAACATCTAGTCA60.1846153846153846No Hit
ATATATAGTCACACACACACACACACAACTTCTACAAACCCTAGTGCCCA60.1846153846153846No Hit
AAACTAAGGAGAGAGCTACCCTCCCAGGTCTGCTTATAGAGGCTAACAGA60.1846153846153846No Hit
GAGTATTCTCTGCAGGCAAGCTCTCTTCTTGCAGGGCAGGTACCCAGATA60.1846153846153846No Hit
ACCCGGGCCTGACCCGGGGCACAAGCCCCTTCCGCTCCACTCGAGCCCCA60.1846153846153846No Hit
GTACATGGGAGGAGGAGAAATCGGAATTGTGGGAAAGGAATGTTTTCAGT60.1846153846153846No Hit
GGATTCCACACGGGATCCTAAGACCACTAGTGAGTGGAACACAACTTCTG60.1846153846153846No Hit
GTATAATGCTGTCAGGTCAACTTAAACAAGCCAACAGAGGCTTTGAGCCT50.15384615384615385No Hit
ACCTACAACTACGATCGCCACATCCATAGTCGATGCAAAACTAGACTACT50.15384615384615385No Hit
TCCTAAGACCACTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGGTTC50.15384615384615385No Hit
GTGTTGGGGTGCCCAGGACTTGGTGGGGTGGGAGTGCTGTGTTCTGACGA50.15384615384615385No Hit
GTACATAGGGAAGCAGACTACCCGGGCCTGACCCGGGGCACAAGCCCCTT50.15384615384615385No Hit
ACTTAGAAATTTGTCGGAATTCTGGCAACAGTTAATTCCAGAGGGGCGGA50.15384615384615385No Hit
CTACCAGCCCTTCCACTGCAGGGGTGATGGTGTGCCCATGACTAGGATAA50.15384615384615385No Hit
GCTTAGAACTGCCTGTGACTCCAGCTTCAGGACATGCTGCATACAGCTGT50.15384615384615385No Hit
TATATACACCACCCAACTAAGCCACTCTAGAGCTATCCAGAGTGCTCTCG50.15384615384615385No Hit
CTCTAGAGCTATCCAGAGTGCTCTCGCTCGTGTTGTTATTAAATCCCACA50.15384615384615385No Hit
CTCACTACCAGCCCTTCCACTGCAGGGGTGATGGTGTGCCCATGACTAGG50.15384615384615385No Hit
TTCCAAGACTCCTCCCATTTCATGTTCAACACTCACTACCAGCCCTTCCA50.15384615384615385No Hit
TCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAGCAAGCTCT50.15384615384615385No Hit
GTCTAAGAGGAGCGAGGTTAACGAAATGGTTGGGTTGTGAATAACTAACG50.15384615384615385No Hit
ACCCATAGTTGATCCGCCCCTCTGGAATTAACTGTTGCCAGAATTCCGAC50.15384615384615385No Hit
GATTAAAGGCATGTATTCCCTACCCTCCATCATGCCTAATTTGCTCTTTT50.15384615384615385No Hit
TTCCAAGGGAGCACCAGGCCTGGAGGAAAACAGCTTGCTCAGGCAGGTCC40.12307692307692308No Hit
CTCTTAGACACTAACATTTCTCCGTCCTTCAATAACGTCATCCCTCAACT40.12307692307692308No Hit
GTATAGCCTTGGCTGTCCTCAGCTCACTCTGTAGACCAGGCTGGCCTCGA40.12307692307692308No Hit
TATATATACACCACCCAACTAAGCCACTCTAGAGCTATCCAGAGTGCTCT40.12307692307692308No Hit
ACCTGAGACTGCTGTACATAGGGAAGCAGACTACCCGGGCCTGACCCGGG40.12307692307692308No Hit
GTGTTGATAATTGATTGGATTTGGTACTCTACCCGATCAGGTATTTTAAG40.12307692307692308No Hit
GACCTGGGAGGGTAGCTCTCTCCTTAGTTTTGAGTGGGCAGAGTATTCTC40.12307692307692308No Hit
CCTCAACACAGCACTCAACGACATTGCTGTGGGGACATGGATCCAGGAGA40.12307692307692308No Hit
GCTCTTAACAGTGACAACTATAACAGCTAGCTTCAGAGATTACCAGATGG40.12307692307692308No Hit
CTTCAATAACGTCATCCCTCAACTTTGCAAATTGCTCTCCGTCGACCCAT40.12307692307692308No Hit
TCCTACCACTGTGGAGGTGTTAGCCGCGCTGGCTGCGGCTCTGCCTCCCT40.12307692307692308No Hit
TCTCTGAAGCTAGCTGTTATAGTTGTCACTGTTAAGAGCTTGCTCTTCAG40.12307692307692308No Hit
ATATATACACCACCCAACTAAGCCACTCTAGAGCTATCCAGAGTGCTCTC40.12307692307692308No Hit
TTCTTTAAGTGACTTATGAAAGTCCTTCTTGATGTCCTCTATCATCATCA40.12307692307692308No Hit
CCCCTGCAGTGGAAGGGCTGGTAGTGAGTGTTGAACATGAAATGGGAGGA40.12307692307692308No Hit
CTAGTCACCTGGGTGAACGCATCCTTCAACCACAGTCCCCCTGCCTCTGC40.12307692307692308No Hit
GGCTAACAGAGTCACCTGAAGAGCAAGCTCTTAACAGTGACAACTATAAC40.12307692307692308No Hit
GTGTATATATATTCAGTAACGTGAATTGCAGTAGTCTAGTTTTGCATCGA40.12307692307692308No Hit
CTCTTTAGCAGTGCTCTCCTGTCATTCTTTAAGTGACTTATGAAAGTCCT40.12307692307692308No Hit
AACTATAACAGCTAGCTTCAGAGATTACCAGATGGCGAAAGGCAAACGTA40.12307692307692308No Hit
CCTAAGACCACTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGGTTCG40.12307692307692308No Hit
CTTCCGCTCCACTCGAGCCCCAGGGTACCTTGCCAGCAGACACGCCCGAC40.12307692307692308No Hit
CTGCAAGAACAGTGCGTGCTCTCAACTACGAGATGGTCACGAGATGGTCA40.12307692307692308No Hit
CCTCAGTTGGGCTCATTTTGGTTGAAAAGAGTAGAAAATTACTGGTTTTA40.12307692307692308No Hit
GATTTGGTACTCTACCCGATCAGGTATTTTAAGCCAAGTGATTTGAGAAC40.12307692307692308No Hit
GAGATTCACACTGTGAACTTTTTTTCCAAGAGGCAAGACAGGAACTTAGA40.12307692307692308No Hit
GCCCAGGACTTGGTGGGGTGGGAGTGCTGTGTTCTGACGATGGTGAGTGG40.12307692307692308No Hit
CAAATCACTTGGCTTAAAATACCTGATCGGGTAGAGTACCAAATCCAATC40.12307692307692308No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)