##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062040_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 449744 Sequences flagged as poor quality 0 Sequence length 25 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.342783894837954 32.0 32.0 32.0 32.0 32.0 2 31.0585332989434 32.0 32.0 32.0 32.0 32.0 3 31.085070617951544 32.0 32.0 32.0 32.0 32.0 4 31.074073250560318 32.0 32.0 32.0 32.0 32.0 5 31.094075740865915 32.0 32.0 32.0 32.0 32.0 6 34.71257204098332 36.0 36.0 36.0 32.0 36.0 7 34.62715455903803 36.0 36.0 36.0 32.0 36.0 8 34.58684718417589 36.0 36.0 36.0 32.0 36.0 9 34.6580721477107 36.0 36.0 36.0 32.0 36.0 10 34.487417286278415 36.0 36.0 36.0 32.0 36.0 11 34.65872585292966 36.0 36.0 36.0 32.0 36.0 12 34.54158810345441 36.0 36.0 36.0 32.0 36.0 13 34.6040480806859 36.0 36.0 36.0 32.0 36.0 14 34.57703715891707 36.0 36.0 36.0 32.0 36.0 15 34.53609164324593 36.0 36.0 36.0 32.0 36.0 16 34.552074068803584 36.0 36.0 36.0 32.0 36.0 17 34.51664502472518 36.0 36.0 36.0 32.0 36.0 18 34.530137144686755 36.0 36.0 36.0 32.0 36.0 19 34.44667188444982 36.0 36.0 36.0 32.0 36.0 20 34.43623705930485 36.0 36.0 36.0 32.0 36.0 21 34.39140711160127 36.0 36.0 36.0 32.0 36.0 22 34.36641066918069 36.0 36.0 36.0 32.0 36.0 23 34.35605588957274 36.0 36.0 36.0 32.0 36.0 24 34.30502685972464 36.0 36.0 36.0 32.0 36.0 25 33.99674703831513 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 4 7.0 5 28.0 6 95.0 7 14.0 8 79.0 9 78.0 10 31.0 11 6.0 12 12.0 13 19.0 14 92.0 15 98.0 16 157.0 17 210.0 18 265.0 19 404.0 20 536.0 21 705.0 22 1009.0 23 1288.0 24 1787.0 25 2444.0 26 3492.0 27 4633.0 28 6350.0 29 8845.0 30 12476.0 31 17417.0 32 26393.0 33 39974.0 34 97191.0 35 223609.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.65708923862338 22.404822363242598 13.180118202153254 24.75797019598077 2 13.114127147888578 22.19440392756768 43.639047991746416 21.052420932797325 3 16.999524171636182 27.60849553744147 32.071498770406144 23.320481520516207 4 9.822282311397325 19.138229316302795 43.33669852480087 27.70278984749901 5 10.099844083976683 41.435183640605786 37.88603673034535 10.578935545072186 6 26.482778874113695 43.39487893707576 19.223230554622372 10.899111634188179 7 24.92977559351309 34.275742642574464 23.264867319275098 17.52961444463735 8 22.518118845379917 40.152162686753215 20.743406877147997 16.58631159071888 9 24.893707009772275 16.041003494868995 22.54947354361908 36.51581595173965 10 13.859679979695386 28.52931812565261 36.34325483848704 21.267747056164964 11 31.339169620433537 24.250351780275366 28.076073597777107 16.33440500151399 12 21.807762182958108 27.672369264747793 32.96901717013394 17.55085138216016 13 26.09382896350898 23.22370369051091 28.999797408160223 21.68266993781989 14 18.82658819286924 25.994964795864988 28.58290835349715 26.595538657768618 15 21.78670822665034 34.150283869531336 24.13714794612045 19.925859957697874 16 20.692011789533673 29.209816300544063 29.992075011353215 20.10609689856905 17 17.86660433224248 30.938578329882677 29.966383935528395 21.228433402346447 18 17.74316692969823 30.07330010751276 33.08989001644967 19.093642946339333 19 22.154263902335884 28.503321870931124 28.543607206846282 20.798807019886713 20 20.614202002532654 31.510401018402916 29.506533045794747 18.368863933269683 21 21.09820800655195 28.036507526728567 28.12975706159365 22.73552740512583 22 20.841781942419622 31.093626539946804 28.481476123173486 19.583115394460087 23 20.84229031755569 30.66381823441707 29.05133854062354 19.442552907403698 24 21.76353419017415 30.29344016024036 29.093863016747346 18.849162632838144 25 20.837719405615804 30.063715813672975 30.66571118910221 18.432853591609007 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 262.0 1 262.0 2 251.0 3 240.0 4 240.0 5 240.0 6 818.0 7 1396.0 8 1396.0 9 1396.0 10 1519.5 11 1643.0 12 1643.0 13 1643.0 14 2428.0 15 3213.0 16 3213.0 17 3213.0 18 5967.5 19 8722.0 20 8722.0 21 8722.0 22 12840.5 23 16959.0 24 16959.0 25 16959.0 26 26582.5 27 36206.0 28 36206.0 29 36206.0 30 46313.5 31 56421.0 32 56421.0 33 56421.0 34 57997.5 35 59574.0 36 59574.0 37 59574.0 38 59094.5 39 58615.0 40 58615.0 41 58615.0 42 54867.0 43 51119.0 44 51119.0 45 51119.0 46 52446.0 47 53773.0 48 53773.0 49 53773.0 50 46785.5 51 39798.0 52 39798.0 53 39798.0 54 32467.0 55 25136.0 56 25136.0 57 25136.0 58 20394.5 59 15653.0 60 15653.0 61 15653.0 62 12764.0 63 9875.0 64 9875.0 65 9875.0 66 7832.5 67 5790.0 68 5790.0 69 5790.0 70 4290.5 71 2791.0 72 2791.0 73 2791.0 74 2144.0 75 1497.0 76 1497.0 77 1497.0 78 1059.0 79 621.0 80 621.0 81 621.0 82 396.0 83 171.0 84 171.0 85 171.0 86 124.5 87 78.0 88 78.0 89 78.0 90 51.0 91 24.0 92 24.0 93 24.0 94 20.5 95 17.0 96 17.0 97 17.0 98 83.5 99 150.0 100 150.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0013340922836102315 2 0.0 3 4.4469742787007723E-4 4 0.00933864598527162 5 0.03179586609271052 6 0.05936710662065531 7 0.10450389554946815 8 0.10850617240029885 9 0.11428723896260984 10 0.13007399765199756 11 0.13340922836102317 12 0.13163043864954285 13 0.12562702337329681 14 0.11273079796506456 15 0.13207513607741292 16 0.11828951581344054 17 0.12318118752001138 18 0.11006261339784411 19 0.09983457255683234 20 0.09183001885517095 21 0.0916076701412359 22 0.1020580596961827 23 0.08315841901170444 24 0.09316411113878117 25 0.09005122914369063 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 449744.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.099309463202474 #Duplication Level Percentage of deduplicated Percentage of total 1 63.22441676142419 15.86889201925471 2 14.89230148885889 7.475729673763603 3 6.68934649314481 5.036939332140893 4 3.6568755349851814 3.671402028840286 5 2.220048527247018 2.786084250434989 6 1.4845803348057633 2.2357164747764755 7 1.0996659655454728 1.9320599462764014 8 0.8123309555400134 1.6311156831710212 9 0.6198897228258544 1.4002923587638432 >10 4.33035928027416 21.860005535278237 >50 0.5480569378843472 9.745285676316758 >100 0.3822209388805075 18.313978687040112 >500 0.03192564686704935 5.414641162168961 >1k 0.007981411716762338 2.627857171773689 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCATAGGGTCTTCTCGTCTTATTAT 1696 0.3771034188338255 No Hit GTCCTAAAGTGTGTATTTCTCATTT 1518 0.3375253477533886 No Hit CTTTAGGACGTGAAATATGGCGAGG 1450 0.32240563520580595 No Hit GATATACACTGTTCTACAAATCCCG 1284 0.28549574869258953 No Hit GTCCTACAGTGGACATTTCTAAATT 1267 0.28171582055569394 No Hit GTCCTACAGTGTGCATTTCTCATTT 1264 0.2810487744138888 No Hit CTGTAGGACGTGGAATATGGCAAGA 1224 0.27215482585648726 No Hit GTATCAACGCAGAGTACTTTTTTTT 1067 0.23724607776868617 No Hit TTGTAGAACAGTGTATATCAATGAG 1036 0.23035326763669997 No Hit GTATTAGAGGCACTGCCTGCCCAGT 990 0.22012522679568822 No Hit CTGTAGGACCTGGAATATGGCGAGA 977 0.2172346935145327 No Hit GTGTATATCAATGAGTTACAATGAG 866 0.19255398626774342 No Hit GATTAAACCTTGTACCTTTTGCATA 839 0.18655057099149738 No Hit GTCAGGATACCGCGGCCGTTAAACT 815 0.18121420185705647 No Hit CTCTAATACTTGTAATGCTAGAGGT 799 0.17765662243409583 No Hit ACCTATAACTTCTCTGTTAACCCAA 793 0.1763225301504856 No Hit ATAAATAATCCACCTATAACTTCTC 765 0.17009676616030453 No Hit CCATTGGGATGTCCTGATCCAACAT 760 0.16898502259062934 No Hit GTTATATAATTTAAGCTCCATAGGG 749 0.1665391867373439 No Hit TATCAACGCAGAGTACTTTTTTTTT 720 0.1600910740332278 No Hit GCCTAAAGGAAAGATCCAAAAAGAT 717 0.15942402789142268 No Hit CCTATAACTTCTCTGTTAACCCAAC 706 0.15697819203813726 No Hit CACTATAAATAATCCACCTATAACT 694 0.15431000747091678 No Hit CTATAGAACTAGTACCGCAAGGGAA 691 0.15364296132911168 No Hit GACTATAGGCAATAATCACACTATA 679 0.15097477676189122 No Hit CTGTTAGTATGAGTAACAAGAATTC 676 0.1503077306200861 No Hit CTTCTACACCATTGGGATGTCCTGA 671 0.1491959870504109 No Hit ATCTATAACTTTATAGATGCAACAC 667 0.14830659219467077 No Hit GTTCATGCTAGTCCCTAATTAAGGA 651 0.14474901277171012 No Hit GTTATAGATTAACCCAATTTTAAGT 642 0.14274787434629477 No Hit CTGTTAACCCAACACCGGAATGCCT 638 0.1418584794905546 No Hit CCTCTAGCATTACAAGTATTAGAGG 628 0.13963499235120422 No Hit GTACATGGGAGAAATCGTAAATAGA 613 0.13629976164217866 No Hit GTGTATATCAATGAGTTACAATGAA 610 0.13563271550037354 No Hit GTATCAACGCAGAGTACATGGGAGA 599 0.1331868796470881 No Hit ATCCTGACCGTGCAAAGGTAGCATA 581 0.12918460279625743 No Hit GATTAAAGATAAGAGACAGTTGGAC 566 0.12584937208723185 No Hit GGTCAGGATACCGCGGCCGTTAAAC 562 0.1249599772314917 No Hit CTATTAAAGGTTTTTTCCGTTCCAG 549 0.12206944395033618 No Hit CTTTATTGGTGGCTGCTTTTAGGCC 542 0.12051300295279092 No Hit GTTCTACAAATCCCGTTTCCAACGA 534 0.11873421324131062 No Hit GTTCTACAGTGTGGTTTTTATCATT 520 0.11562133124622008 No Hit GTCCTTCAGTGTGCATTTCTCATTT 510 0.11339784410686969 No Hit ATTTAGAAATGTCCACTGTAGGACG 504 0.11206375182325945 No Hit TACTAACAGTGTTGCATCTATAAAG 503 0.11184140310932442 No Hit GCTATCACCAAGCTCGTTAGGCTTT 500 0.1111743569675193 No Hit GTATCCTGACCGTGCAAAGGTAGCA 492 0.109395567256039 No Hit GATATACACTGTTCTACAATGCCGG 490 0.10895086982816891 No Hit CTGAAGGACCTGGAATATGGCGAGA 487 0.10828382368636379 No Hit CATTTACACCTACTACCCAACTATC 479 0.10650503397488349 No Hit TGCTAGAGGTGATGTTTTTGGTAAA 478 0.10628268526094846 No Hit GATATATTTTGATCAACGGACCAAG 477 0.10606033654701343 No Hit ATCGTAAATAGATAGAAACCGACCT 474 0.1053932904052083 No Hit GTTAGTATGAGTAACAAGAATTCCA 473 0.10517094169127325 No Hit ACCTTTGCACGGTCAGGATACCGCG 471 0.10472624426340318 No Hit GTTTAAAATTGAACTTAAATTCATT 461 0.1025027571240528 No Hit GTATTGGAATTAGTGAAATTGGAGT 455 0.10116866484044255 No Hit GATAGAAACCGACCTGGATTGCTCC 454 0.10094631612650752 No Hit GAATATGGCAAGAAAACTGAAAATC 453 0.10072396741257249 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 4.446974278700772E-4 0.0 8 0.0 0.0 0.0 4.446974278700772E-4 0.0 9 0.0 0.0 0.0 6.670461418051159E-4 0.0 10 0.0 0.0 0.0 6.670461418051159E-4 0.0 11 0.0 0.0 0.0 6.670461418051159E-4 0.0 12 0.0 0.0 0.0 6.670461418051159E-4 0.0 13 0.0 0.0 0.0 6.670461418051159E-4 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTCCC 30 7.702848E-4 19.003006 13 TACGACC 30 7.708619E-4 19.000893 4 TTAGCCT 35 9.916062E-5 19.00089 4 GGTCTAC 25 0.006035549 18.994549 1 AAACTTG 50 4.54572E-6 17.100801 6 TAGCCTA 50 4.54572E-6 17.100801 5 AACTTGC 40 2.7546522E-4 16.625778 7 CGTCCCC 35 0.0021646812 16.288292 14 ACTGTGT 50 8.688502E-5 15.200712 8 CACCTTT 120 3.6379788E-12 14.2522545 14 GTCCCCA 40 0.005265844 14.2522545 15 CCACCTT 120 3.6379788E-12 14.2522545 13 TTGAGAT 40 0.0052697356 14.250668 9 GTTCGCA 40 0.0052697356 14.250668 9 CGTGTGC 40 0.0052697356 14.250668 8 CTCTGCC 40 0.0052697356 14.250668 9 ATAAAGG 40 0.0052697356 14.250668 3 TATACCA 40 0.0052697356 14.250668 5 GGGATGC 40 0.0052697356 14.250668 7 GTACGAC 40 0.0052697356 14.250668 3 >>END_MODULE