##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062040_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 449744 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27040049450354 32.0 32.0 32.0 32.0 32.0 2 31.496538030524032 32.0 32.0 32.0 32.0 32.0 3 31.60579574157743 32.0 32.0 32.0 32.0 32.0 4 31.684969671635418 32.0 32.0 32.0 32.0 32.0 5 31.656144384360882 32.0 32.0 32.0 32.0 32.0 6 35.275868049379206 36.0 36.0 36.0 36.0 36.0 7 35.297696022626205 36.0 36.0 36.0 36.0 36.0 8 35.25273933615568 36.0 36.0 36.0 36.0 36.0 9 35.34088948379522 36.0 36.0 36.0 36.0 36.0 10 35.229819630723256 36.0 36.0 36.0 36.0 36.0 11 35.351064160944894 36.0 36.0 36.0 36.0 36.0 12 35.265762300330856 36.0 36.0 36.0 36.0 36.0 13 35.321347255327474 36.0 36.0 36.0 36.0 36.0 14 35.27998594756128 36.0 36.0 36.0 36.0 36.0 15 35.27002027820271 36.0 36.0 36.0 36.0 36.0 16 35.28139341492049 36.0 36.0 36.0 36.0 36.0 17 35.272675121847094 36.0 36.0 36.0 36.0 36.0 18 35.26631594862855 36.0 36.0 36.0 36.0 36.0 19 35.23161176135757 36.0 36.0 36.0 36.0 36.0 20 35.22375618129425 36.0 36.0 36.0 36.0 36.0 21 35.2064685687858 36.0 36.0 36.0 36.0 36.0 22 35.18722206410758 36.0 36.0 36.0 36.0 36.0 23 35.17840149062578 36.0 36.0 36.0 36.0 36.0 24 35.15291810452168 36.0 36.0 36.0 36.0 36.0 25 35.142427692198225 36.0 36.0 36.0 36.0 36.0 26 35.126145095876765 36.0 36.0 36.0 36.0 36.0 27 35.07649907502935 36.0 36.0 36.0 36.0 36.0 28 35.049757195204386 36.0 36.0 36.0 36.0 36.0 29 35.01410580241204 36.0 36.0 36.0 36.0 36.0 30 34.973569408374544 36.0 36.0 36.0 36.0 36.0 31 34.97816313280444 36.0 36.0 36.0 36.0 36.0 32 34.93075171653207 36.0 36.0 36.0 36.0 36.0 33 34.95128339677683 36.0 36.0 36.0 36.0 36.0 34 34.93206579743143 36.0 36.0 36.0 36.0 36.0 35 34.92424356967519 36.0 36.0 36.0 36.0 36.0 36 34.872200629691555 36.0 36.0 36.0 36.0 36.0 37 34.79952817602903 36.0 36.0 36.0 32.0 36.0 38 34.77991701945996 36.0 36.0 36.0 32.0 36.0 39 34.66630349710057 36.0 36.0 36.0 32.0 36.0 40 34.7229623963855 36.0 36.0 36.0 32.0 36.0 41 34.69733893059163 36.0 36.0 36.0 32.0 36.0 42 34.690254900565655 36.0 36.0 36.0 32.0 36.0 43 34.69282747518589 36.0 36.0 36.0 32.0 36.0 44 34.60738998185634 36.0 36.0 36.0 32.0 36.0 45 34.58053025721299 36.0 36.0 36.0 32.0 36.0 46 34.43547662670319 36.0 36.0 36.0 32.0 36.0 47 34.45461418051158 36.0 36.0 36.0 32.0 36.0 48 34.38113237753033 36.0 36.0 36.0 32.0 36.0 49 34.363982621224515 36.0 36.0 36.0 32.0 36.0 50 33.99590656017646 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 6.0 22 14.0 23 58.0 24 151.0 25 349.0 26 864.0 27 1744.0 28 3165.0 29 5555.0 30 8623.0 31 12825.0 32 20062.0 33 34118.0 34 77153.0 35 285054.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.26819432488762 22.962251182778477 13.58721642788666 25.182338064447247 2 12.60609214034292 22.79516239852177 43.296488758735855 21.302256702399454 3 16.558308726742325 27.946342808353197 32.30637873990537 23.18896972499911 4 9.670612615176633 19.65962858870824 43.288181721156924 27.381577074958198 5 9.813138140808993 41.563645095876765 37.8908890390978 10.732327724216443 6 26.48195417837703 43.57745739798641 19.214041765982426 10.726546657654131 7 24.795883880607636 34.31707816001992 23.42154647977516 17.46549147959728 8 22.59329752036714 40.14083567540646 20.56080792628695 16.70505887793945 9 24.945524565085915 15.8378988935928 22.400965882813335 36.81561065850795 10 13.838761606602867 28.568029812515565 36.26974456579743 21.323464015084138 11 31.273346614963177 24.241568536767584 28.208714290796543 16.276370557472696 12 21.615630225194778 27.639501583122843 33.01678288092781 17.72808531075456 13 26.15865914831549 23.18541214557615 29.181712262976273 21.474216443132093 14 18.862730797965064 25.814463339144044 28.571587391938525 26.751218470952367 15 21.708794336333558 34.18722651108186 24.16730406631328 19.9366750862713 16 20.577752182913354 29.292951752445283 29.90885905950732 20.22043700513404 17 17.841927852289302 30.772839659895407 29.92569105980291 21.45954142801238 18 17.720303105766835 30.058877939449996 33.09927425379772 19.12154470098545 19 22.34159877619268 28.3734746878224 28.507550962325233 20.777375573659683 20 20.78475929586453 31.221831134670246 29.494177785979993 18.499231783485236 21 21.312791276815254 27.78358354975275 28.201821480664556 22.70180369276744 22 20.925237468426484 30.858443914760397 28.279865879255755 19.936452737557367 23 20.783156640221993 30.55226973567185 29.098998541392433 19.56557508271372 24 22.050393784825832 29.999688707647564 28.929065366946976 19.020852140579628 25 21.018050348866684 29.80219770446167 30.43811785423643 18.74163409243522 26 17.69766288747129 30.596362811650206 32.49611444758451 19.20985985329399 27 18.65873914097225 31.640210699046783 29.769133790337104 19.93191636964386 28 18.62462144626427 30.261841338734996 30.096189336902818 21.017347878097915 29 19.789702586360242 29.081655341705503 28.553132448681918 22.575509623252337 30 19.946991830871923 29.39818829462225 29.70836612991448 20.94645374459134 31 21.280550713294673 27.599256465900602 30.18695079867658 20.933242022128145 32 18.749193982327643 30.908609825188666 29.92649118828128 20.415705004202408 33 19.657849798996764 31.077457397986407 30.16271478885766 19.101978014159165 34 19.59665584559968 30.231022368479564 31.861964690710188 18.310357095210566 35 19.792815468355332 31.437884663275106 29.44230495570814 19.326994912661423 36 18.370350935316104 30.0137190071619 30.52823736328242 21.087692694239575 37 20.574292473806853 28.990341000053366 27.940614049131046 22.494752477008735 38 20.27624665642378 31.30743557987562 28.81201041483692 19.604307348863685 39 20.501623160048027 30.010005781117975 28.1273624760973 21.361008582736694 40 21.786394037496887 29.95948806432104 30.039311252623712 18.21480664555836 41 21.21261982002815 28.20248278438287 31.40724467855658 19.177652717032398 42 20.30570064551133 31.876207693214237 28.72314168117566 19.09494998009877 43 18.09313733120165 31.79112475901833 30.38937301405532 19.7263648957247 44 18.503373224998775 31.171756522976622 29.766876131264482 20.55799412076012 45 18.92732625362435 31.25811587242293 30.14590782147749 19.668650052475233 46 20.75382337114828 29.04116655623102 28.360542009276596 21.84446806334411 47 21.90111954817837 30.203119614884322 28.085872791755147 19.809888045182163 48 19.506988699786092 30.78452213125325 27.82249636445302 21.885992804507634 49 20.471707343105166 29.431567525259712 29.568539205920025 20.528185925715096 50 18.807881050480617 31.228251177910643 28.104870179682795 21.858997591925945 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 112.0 1 65.5 2 19.0 3 55.0 4 91.0 5 82.5 6 74.0 7 57.5 8 41.0 9 64.5 10 88.0 11 138.5 12 189.0 13 375.5 14 562.0 15 798.5 16 1035.0 17 1568.0 18 2101.0 19 2242.0 20 2383.0 21 3013.0 22 3643.0 23 3994.5 24 4346.0 25 6742.5 26 9139.0 27 13394.0 28 17649.0 29 20349.5 30 23050.0 31 23681.5 32 24313.0 33 28683.5 34 33054.0 35 37959.0 36 42864.0 37 46315.0 38 49766.0 39 46586.0 40 43406.0 41 41719.5 42 40033.0 43 32828.0 44 25623.0 45 23929.5 46 22236.0 47 20289.0 48 18342.0 49 16479.5 50 14617.0 51 14607.5 52 14598.0 53 13279.5 54 11961.0 55 11014.0 56 10067.0 57 9864.0 58 9661.0 59 8389.5 60 7118.0 61 6328.0 62 5538.0 63 4670.5 64 3803.0 65 3355.5 66 2908.0 67 2442.0 68 1976.0 69 1658.0 70 1340.0 71 1057.0 72 774.0 73 638.0 74 502.0 75 400.5 76 299.0 77 252.5 78 206.0 79 154.5 80 103.0 81 81.5 82 60.0 83 44.0 84 28.0 85 20.0 86 12.0 87 10.0 88 8.0 89 5.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03713223522715145 2 0.0037799281368956564 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 2.2234871393503862E-4 17 0.0 18 0.0 19 0.0 20 2.2234871393503862E-4 21 0.0 22 0.0 23 0.0 24 0.0013340922836102315 25 4.4469742787007723E-4 26 2.2234871393503862E-4 27 6.670461418051157E-4 28 0.0013340922836102315 29 0.0 30 4.4469742787007723E-4 31 0.0 32 4.4469742787007723E-4 33 0.0 34 8.893948557401545E-4 35 0.0 36 6.670461418051157E-4 37 0.001778789711480309 38 2.2234871393503862E-4 39 8.893948557401545E-4 40 0.0 41 0.00155644099754527 42 0.005114020420505887 43 0.00466932299263581 44 0.005781066562311003 45 0.001778789711480309 46 0.002223487139350386 47 0.0020011384254153474 48 0.004002276850830695 49 0.003557579422960618 50 0.00155644099754527 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 449744.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.71606861145006 #Duplication Level Percentage of deduplicated Percentage of total 1 65.17976769784701 19.36886448987598 2 14.610569375073304 8.683373640040585 3 6.4856847830731175 5.781871620181151 4 3.4951454709078504 4.154479304819864 5 2.0693387255572318 3.074630577449466 6 1.4314109025106219 2.552154275410997 7 0.9855353723737084 2.050036572112767 8 0.7261009846623844 1.7261493343255088 9 0.5545952399352833 1.4832351181350436 >10 3.7232019954447715 21.569311319345967 >50 0.4482786444946347 9.32230899486163 >100 0.26492594349098614 15.082619297705351 >500 0.0246964862576343 4.792030206380839 >1k 7.483783714434636E-4 0.35893524935486704 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 1614 0.3588708242911523 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 937 0.20834074495713117 No Hit CACTATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATG 814 0.1809918531431214 No Hit GATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAAACTTCTAAC 788 0.1752107865808104 No Hit GTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCTC 768 0.17076381230210963 No Hit ATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTA 760 0.16898502259062934 No Hit GTTATATAATTTAAGCTCCATAGGGTCTTCTCGTCTTATTATTATATTTC 756 0.16809562773488917 No Hit ACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATC 750 0.16676153545127895 No Hit GACTATAGGCAATAATCACACTATAAATAATCCACCTATAACTTCTCTGT 736 0.1636486534561884 No Hit CCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATCC 730 0.16231456117257817 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 729 0.16209221245864314 No Hit CTCTAATACTTGTAATGCTAGAGGTGATGTTTTTGGTAAACAGGCGGGGT 718 0.15964637660535771 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 714 0.15875698174961755 No Hit CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA 708 0.15742288946600733 No Hit ATCTATAACTTTATAGATGCAACACTGTTAGTATGAGTAACAAGAATTCC 677 0.15053007933402113 No Hit GCCTAAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAACAAGAACC 661 0.1469724999110605 No Hit CTGTTAGTATGAGTAACAAGAATTCCAATTCTCCAGGCATACGCGTATAA 654 0.14541605891351525 No Hit GTTATAGATTAACCCAATTTTAAGTTTAGGAAGTTGGTGTAAATTATGGA 650 0.1445266640577751 No Hit CTATAGAACTAGTACCGCAAGGGAAAGATGAAAGACTAATTAAAAGTAAG 618 0.13741150521185386 No Hit CTATTAAAGGTTTTTTCCGTTCCAGAAGAGCTGTCCCTCTTTTGGCTATA 617 0.1371891564979188 No Hit GATTAAAGATAAGAGACAGTTGGACCCTCGTTTAGCCGTTCATGCTAGTC 603 0.13407627450282827 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 599 0.1331868796470881 No Hit CTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATCCAAAAAGATAAAA 595 0.13229748479134795 No Hit GTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGCTACCTTTGCAC 594 0.13207513607741292 No Hit CTTCTACACCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTA 589 0.13096339250773772 No Hit ATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACT 579 0.12873990536838736 No Hit CCTCTAGCATTACAAGTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTT 570 0.126738766942972 No Hit CTTTATTGGTGGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTT 544 0.120957700380661 No Hit GTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGATAAAAACCAC 528 0.11740012095770037 No Hit TACTAACAGTGTTGCATCTATAAAGTTATAGATTAACCCAATTTTAAGTT 526 0.1169554235298303 No Hit GTACATGGGAGAAATCGTAAATAGATAGAAACCGACCTGGATTGCTCCGG 516 0.11473193639047992 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 510 0.11339784410686969 No Hit TTGTAGAACAGTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGA 506 0.11250844925112953 No Hit ATCGTAAATAGATAGAAACCGACCTGGATTGCTCCGGTCTGAACTCAGAT 504 0.11206375182325945 No Hit GTATCAACGCAGAGTACATGGGAGAAATCGTAAATAGATAGAAACCGACC 497 0.11050731082571418 No Hit GGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCT 484 0.10761677754455869 No Hit GATATATTTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAATC 473 0.10517094169127325 No Hit GTTAGTATGAGTAACAAGAATTCCAATTCTCCAGGCATACGCGTATAACA 470 0.10450389554946815 No Hit CATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCA 465 0.10339215197979294 No Hit GTATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGA 465 0.10339215197979294 No Hit ATTTCAGCCTCTTCACTGAAAGGTCAATTTCACTGATTAAAGATAAGAGA 460 0.10228040841011776 No Hit ACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCA 459 0.1020580596961827 No Hit GCTATCACCAAGCTCGTTAGGCTTTTCACCTCTACCTAAAAATCTTCTCA 455 0.10116866484044255 No Hit GATAGAAACCGACCTGGATTGCTCCGGTCTGAACTCAGATCACGTAGGAC 453 0.10072396741257249 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 2.223487139350386E-4 0.0 7 0.0 0.0 0.0 2.223487139350386E-4 0.0 8 0.0 0.0 0.0 2.223487139350386E-4 0.0 9 0.0 0.0 0.0 2.223487139350386E-4 0.0 10 0.0 0.0 0.0 2.223487139350386E-4 0.0 11 0.0 0.0 0.0 2.223487139350386E-4 0.0 12 0.0 0.0 0.0 2.223487139350386E-4 0.0 13 0.0 0.0 0.0 2.223487139350386E-4 0.0 14 0.0 0.0 0.0 2.223487139350386E-4 0.0 15 0.0 0.0 0.0 2.223487139350386E-4 0.0 16 0.0 0.0 0.0 2.223487139350386E-4 0.0 17 0.0 0.0 0.0 2.223487139350386E-4 0.0 18 0.0 0.0 0.0 2.223487139350386E-4 0.0 19 0.0 0.0 0.0 2.223487139350386E-4 0.0 20 0.0 0.0 0.0 2.223487139350386E-4 0.0 21 0.0 0.0 0.0 2.223487139350386E-4 0.0 22 0.0 0.0 0.0 2.223487139350386E-4 0.0 23 0.0 0.0 0.0 2.223487139350386E-4 0.0 24 0.0 0.0 0.0 2.223487139350386E-4 0.0 25 0.0 0.0 0.0 2.223487139350386E-4 0.0 26 0.0 0.0 0.0 4.446974278700772E-4 0.0 27 0.0 0.0 0.0 4.446974278700772E-4 0.0 28 0.0 0.0 0.0 8.893948557401544E-4 0.0 29 0.0 0.0 0.0 0.001111743569675193 0.0 30 0.0 0.0 0.0 0.0020011384254153474 0.0 31 0.0 0.0 0.0 0.004224625564765733 0.0 32 0.0 0.0 0.0 0.006225763990181081 0.0 33 0.0 0.0 0.0 0.008893948557401544 0.0 34 0.0 0.0 0.0 0.011339784410686969 0.0 35 0.0 0.0 0.0 0.015119712547582626 0.0 36 0.0 0.0 0.0 0.021123127823828667 0.0 37 0.0 0.0 0.0 0.02868298409761998 0.0 38 0.0 0.0 0.0 0.03846632751076168 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCGAC 25 0.00235181 35.198223 11 GGTCGGT 40 1.8181732E-5 32.99833 11 CGATCGT 30 0.005742645 29.331852 17 TGGACCT 55 4.9539085E-6 27.998585 5 GTAATAC 55 4.9539085E-6 27.998585 3 TATTGCG 55 4.9539085E-6 27.998585 16 GGTTTGA 40 7.027296E-4 27.49861 15 GTTACTG 40 7.027296E-4 27.49861 23 TAGGACC 385 0.0 26.284386 4 CTGCATC 85 8.210918E-9 25.881046 29 GGACCTG 665 0.0 24.810776 6 AGGACCT 635 0.0 24.597181 5 AACTAGC 45 0.0013954518 24.448647 42 CGTTTAT 135 0.0 24.448645 36 TCGGCCT 45 0.0013963564 24.445929 43 ACTGTTG 45 0.0013972614 24.44321 26 AGGGGTC 100 1.7389539E-9 24.198778 5 GGGCGTT 110 2.0008883E-10 23.998787 33 CTGTAGG 965 0.0 23.716557 1 TGCGAGA 75 2.0603784E-6 23.465479 19 >>END_MODULE