##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062039_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1021444 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.303227587611264 32.0 32.0 32.0 32.0 32.0 2 31.483677029773535 32.0 32.0 32.0 32.0 32.0 3 31.596798258152184 32.0 32.0 32.0 32.0 32.0 4 31.668057181793618 32.0 32.0 32.0 32.0 32.0 5 31.647091764208316 32.0 32.0 32.0 32.0 32.0 6 35.299123593657605 36.0 36.0 36.0 36.0 36.0 7 35.30424771206253 36.0 36.0 36.0 36.0 36.0 8 35.26272022744272 36.0 36.0 36.0 36.0 36.0 9 35.339431236563144 36.0 36.0 36.0 36.0 36.0 10 35.22965723035232 36.0 36.0 36.0 36.0 36.0 11 35.34412557125011 36.0 36.0 36.0 36.0 36.0 12 35.2782364965676 36.0 36.0 36.0 36.0 36.0 13 35.30311989693023 36.0 36.0 36.0 36.0 36.0 14 35.26577962179033 36.0 36.0 36.0 36.0 36.0 15 35.25005678235909 36.0 36.0 36.0 36.0 36.0 16 35.26664604226957 36.0 36.0 36.0 36.0 36.0 17 35.251237463825724 36.0 36.0 36.0 36.0 36.0 18 35.243898833416225 36.0 36.0 36.0 36.0 36.0 19 35.23073315815649 36.0 36.0 36.0 36.0 36.0 20 35.23705753815187 36.0 36.0 36.0 36.0 36.0 21 35.23082714275085 36.0 36.0 36.0 36.0 36.0 22 35.21812355841338 36.0 36.0 36.0 36.0 36.0 23 35.18015476129871 36.0 36.0 36.0 36.0 36.0 24 35.16916737481448 36.0 36.0 36.0 36.0 36.0 25 35.160019540963575 36.0 36.0 36.0 36.0 36.0 26 35.11831387721696 36.0 36.0 36.0 36.0 36.0 27 35.106882021921905 36.0 36.0 36.0 36.0 36.0 28 35.086191705076345 36.0 36.0 36.0 36.0 36.0 29 35.073477351670775 36.0 36.0 36.0 36.0 36.0 30 35.055633005823125 36.0 36.0 36.0 36.0 36.0 31 35.05900176612717 36.0 36.0 36.0 36.0 36.0 32 35.032818245542586 36.0 36.0 36.0 36.0 36.0 33 35.02105059112394 36.0 36.0 36.0 36.0 36.0 34 35.00108963389084 36.0 36.0 36.0 36.0 36.0 35 34.997855976441194 36.0 36.0 36.0 36.0 36.0 36 34.970700302708714 36.0 36.0 36.0 36.0 36.0 37 34.96196267245194 36.0 36.0 36.0 36.0 36.0 38 34.953582379454964 36.0 36.0 36.0 36.0 36.0 39 34.93058258700428 36.0 36.0 36.0 36.0 36.0 40 34.91770767658335 36.0 36.0 36.0 36.0 36.0 41 34.902062178641216 36.0 36.0 36.0 36.0 36.0 42 34.884083708945376 36.0 36.0 36.0 36.0 36.0 43 34.86537783764945 36.0 36.0 36.0 32.0 36.0 44 34.83346419382756 36.0 36.0 36.0 32.0 36.0 45 34.814648673838214 36.0 36.0 36.0 32.0 36.0 46 34.799480930917404 36.0 36.0 36.0 32.0 36.0 47 34.76490341124917 36.0 36.0 36.0 32.0 36.0 48 34.74587153089156 36.0 36.0 36.0 32.0 36.0 49 34.73248362122642 36.0 36.0 36.0 32.0 36.0 50 34.33187918280395 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 24.0 22 55.0 23 168.0 24 424.0 25 997.0 26 2256.0 27 4166.0 28 6980.0 29 11664.0 30 17618.0 31 25848.0 32 39713.0 33 66783.0 34 155692.0 35 689053.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.960058212530576 17.66335058947043 12.210724659822974 26.16586653817602 2 16.280367573198408 19.3305867816981 37.472317461685016 26.916728183418474 3 19.069469640379896 22.58039882949447 28.142943435682405 30.207188094443232 4 13.16696085831515 15.525780684776342 34.373920032738 36.933338424170515 5 14.859258069948034 36.373114923578775 33.30931504810836 15.458311958364826 6 35.82611641189612 34.128418451561615 15.997971495199922 14.047493641342337 7 31.38194555942372 29.649300402175744 19.61468274325367 19.35407129514687 8 28.372382626947733 33.91414507305344 18.33786286864478 19.375609431354043 9 27.047983051444817 14.91486562161019 18.28489863369896 39.752252693246035 10 16.804413377192983 26.991306390977442 31.074855106516292 25.129425125313283 11 36.896589534032216 21.453745873488906 21.669420937418007 19.980243655060875 12 24.2893394057824 23.540987073202253 28.551051256848147 23.6186222641672 13 30.030133810566216 19.552320048871987 24.6752636463673 25.74228249419449 14 23.410975051006222 18.93916847130141 25.2077451137801 32.44211136391226 15 25.25336680229166 27.079017547706975 21.89645247316544 25.77116317683593 16 25.789034674644963 25.86461439656641 23.269449540745498 25.076901388043133 17 24.318317989042963 26.19203793844792 24.83875768030357 24.650886392205546 18 24.766457615801972 25.72010941394617 25.458812149882228 24.054620820369635 19 25.84977737399211 25.049733514514745 24.913847455171307 24.186641656321832 20 25.75855921475795 24.791985455869785 25.145896540482436 24.303558788889834 21 25.956782750694114 24.540258692595973 24.860393717129867 24.642564839580043 22 25.951006614165827 24.379995379090776 24.974252137170517 24.69474586957288 23 25.127099603208404 24.853662906300205 25.029198888239478 24.990038602251914 24 24.821255669741767 24.95156305222771 25.16342268836564 25.063758589664893 25 25.226934523809526 24.712758458646615 25.18816572681704 24.87214129072682 26 24.91514422300304 24.933158025099882 25.337391660197035 24.814306091700043 27 25.139655506626905 25.101767892841686 24.837631505264127 24.92094509526728 28 25.281835546082988 24.52054915221714 25.122744703743482 25.074870597956394 29 25.05759032110581 25.003157310421862 25.043590464041415 24.895661904430906 30 25.063048245614034 25.00264332706767 24.977776472431078 24.956531954887218 31 25.272506906902205 24.599438832552412 24.903714552563923 25.224339707981464 32 25.17578090581746 24.979196077701914 24.989867266080697 24.855155750399923 33 25.182290952807985 24.824366289292414 24.966909590736254 25.026433167163347 34 25.58322131815997 24.708964509872835 25.09312841980774 24.614685752159453 35 25.392239598528356 24.8516313212106 25.12741790527509 24.628711174985952 36 25.055069206083164 24.86288991445427 25.10705453662567 24.974986342836893 37 25.58523402018153 24.626087569473746 25.015248245350385 24.773430164994338 38 25.20471019458727 24.627879746711518 25.177787524328306 24.989622534372906 39 25.26761291434233 24.990063028788825 24.859560736921868 24.882763319946978 40 25.548341367710808 24.725388763358538 24.804492463610337 24.921777405320313 41 25.012066404877082 24.892332423825007 25.159017104434856 24.93658406686306 42 25.394439902681164 24.849395673521737 24.94877054196018 24.807393881836916 43 25.19529395178621 24.496357482653863 25.043934408253698 25.26441415730623 44 24.87355565607138 24.94904043281855 24.98281766754977 25.194586243560295 45 25.132316572907754 24.918789051256397 25.065056872139994 24.883837503695858 46 25.26330938632612 24.662774054210697 24.904691694519993 25.169224864943185 47 25.221870970710587 25.036639916508964 25.0386958637279 24.70279324905255 48 25.202124930732197 25.184012500514 24.466662358845426 25.147200209908384 49 25.256729198057187 24.91758916866636 24.81214638239213 25.013535250884317 50 25.047458207895833 25.11647942824975 24.851751229899406 24.984311133955014 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3.0 1 14.0 2 25.0 3 63.0 4 101.0 5 125.0 6 149.0 7 132.5 8 116.0 9 157.0 10 198.0 11 296.0 12 394.0 13 755.5 14 1117.0 15 1420.0 16 1723.0 17 1715.0 18 1707.0 19 1649.0 20 1591.0 21 1812.5 22 2034.0 23 2639.0 24 3244.0 25 4221.5 26 5199.0 27 6400.0 28 7601.0 29 9181.5 30 10762.0 31 13195.5 32 15629.0 33 18062.5 34 20496.0 35 23741.5 36 26987.0 37 30305.5 38 33624.0 39 38227.5 40 42831.0 41 46590.5 42 50350.0 43 53351.0 44 56352.0 45 60955.5 46 65559.0 47 69445.0 48 73331.0 49 77129.5 50 80928.0 51 82217.5 52 83507.0 53 84586.0 54 85665.0 55 83573.5 56 81482.0 57 77079.5 58 72677.0 59 66247.0 60 59817.0 61 52879.5 62 45942.0 63 39253.0 64 32564.0 65 26731.5 66 20899.0 67 17412.0 68 13925.0 69 11479.5 70 9034.0 71 7073.0 72 5112.0 73 4223.5 74 3335.0 75 2722.5 76 2110.0 77 1792.0 78 1474.0 79 1133.0 80 792.0 81 641.0 82 490.0 83 387.5 84 285.0 85 228.0 86 171.0 87 115.5 88 60.0 89 37.5 90 15.0 91 16.0 92 17.0 93 10.0 94 3.0 95 4.0 96 5.0 97 7.5 98 10.0 99 6.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03504842164621849 2 0.0041118260031876444 3 4.895030956175766E-4 4 9.790061912351535E-5 5 0.0 6 1.958012382470307E-4 7 0.0 8 0.0 9 0.0 10 3.916024764940614E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.874037147410921E-4 17 0.0 18 1.958012382470307E-4 19 0.0 20 9.790061912351535E-5 21 0.0 22 0.0 23 9.790061912351535E-5 24 0.0012727080486056995 25 3.916024764940614E-4 26 4.895030956175766E-4 27 1.958012382470307E-4 28 0.00146850928685273 29 4.895030956175766E-4 30 3.916024764940614E-4 31 1.958012382470307E-4 32 1.958012382470307E-4 33 0.0 34 4.895030956175766E-4 35 1.958012382470307E-4 36 1.958012382470307E-4 37 0.00146850928685273 38 0.0 39 5.874037147410921E-4 40 0.0 41 0.0012727080486056995 42 0.0057761365282874046 43 0.0034265216693230367 44 0.004503428479681705 45 0.00293701857370546 46 0.0021538136207173374 47 0.0016643105250997608 48 0.004503428479681705 49 0.0036223229075700676 50 0.0018601117633467914 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1021444.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.214497517397646 #Duplication Level Percentage of deduplicated Percentage of total 1 61.86864090014838 27.97359510384525 2 17.395685636910105 15.730743700870036 3 7.718083890048024 10.469078546569293 4 4.238657598871547 7.665950939251048 5 2.493367200670678 5.636817255234254 6 1.6089268248791162 4.364809075750276 7 1.0803942443140808 3.4194638014144787 8 0.755509372639609 2.7327981322867405 9 0.5302434929511972 2.1577223786092343 >10 2.222192040876168 16.48486280346505 >50 0.07042561354045339 2.118558641160139 >100 0.01765521854226371 1.1848915559267676 >500 2.1796560834456212E-4 0.06070806561741935 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9580123824703067E-4 2 0.0 0.0 0.0 0.0 1.9580123824703067E-4 3 0.0 0.0 0.0 0.0 1.9580123824703067E-4 4 0.0 0.0 0.0 0.0 1.9580123824703067E-4 5 0.0 0.0 0.0 0.0 2.9370185737054603E-4 6 0.0 0.0 0.0 0.0 2.9370185737054603E-4 7 0.0 0.0 0.0 0.0 2.9370185737054603E-4 8 0.0 0.0 0.0 0.0 2.9370185737054603E-4 9 0.0 0.0 0.0 0.0 2.9370185737054603E-4 10 0.0 0.0 0.0 0.0 2.9370185737054603E-4 11 0.0 0.0 0.0 0.0 2.9370185737054603E-4 12 0.0 0.0 0.0 0.0 0.001762211144223276 13 0.0 0.0 0.0 0.0 0.0021538136207173374 14 0.0 0.0 0.0 0.0 0.0021538136207173374 15 0.0 0.0 0.0 9.790061912351533E-5 0.0025454160972113987 16 0.0 0.0 0.0 9.790061912351533E-5 0.0026433167163349143 17 0.0 0.0 0.0 9.790061912351533E-5 0.0026433167163349143 18 0.0 0.0 0.0 9.790061912351533E-5 0.0026433167163349143 19 0.0 0.0 0.0 9.790061912351533E-5 0.0027412173354584295 20 0.0 0.0 0.0 2.9370185737054603E-4 0.003230720431076006 21 0.0 0.0 0.0 2.9370185737054603E-4 0.003230720431076006 22 0.0 0.0 0.0 3.9160247649406134E-4 0.0033286210501995215 23 0.0 0.0 0.0 6.853043338646074E-4 0.0033286210501995215 24 0.0 0.0 0.0 8.81105572111638E-4 0.0033286210501995215 25 0.0 0.0 0.0 0.0014685092868527302 0.0033286210501995215 26 0.0 0.0 0.0 0.0021538136207173374 0.0036223229075700676 27 0.0 0.0 0.0 0.0027412173354584295 0.003818124145817098 28 0.0 0.0 0.0 0.0031328198119524907 0.003818124145817098 29 0.0 0.0 0.0 0.003916024764940613 0.003818124145817098 30 0.0 0.0 0.0 0.005874037147410921 0.003818124145817098 31 0.0 0.0 0.0 0.009300558816733957 0.003916024764940613 32 0.0 0.0 0.0 0.014097689153786208 0.004013925384064129 33 0.0 0.0 0.0 0.01928642196733252 0.00420972662231116 34 0.0 0.0 0.0 0.025552061591237504 0.00440552786055819 35 0.0 0.0 0.0 0.03152399935777194 0.00440552786055819 36 0.0 0.0 0.0 0.03994345260239426 0.00440552786055819 37 0.0 0.0 0.0 0.05531384980478617 0.00440552786055819 38 0.0 0.0 0.0 0.07440447053387166 0.004503428479681705 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 515 0.0 28.636238 1 GTATCAA 1135 0.0 25.599205 1 GTATTAG 90 1.5037585E-8 24.457153 1 TCGTGCG 50 0.0025811829 21.998508 9 TACTAGC 65 4.928817E-4 20.309298 2 CGACCCG 55 0.0044836355 19.99962 5 TATAGAC 55 0.0044836355 19.99962 3 CTAATAC 140 4.0799932E-9 18.856787 3 ACCGTAT 70 8.1258523E-4 18.855864 13 GTATAGG 225 0.0 18.587437 1 CTACTAG 95 1.589581E-5 18.535948 1 CGCGTAA 85 1.4313012E-4 18.116417 10 TATAGGG 185 2.1827873E-11 17.839247 2 TCAACGC 1620 0.0 17.653986 4 TATGCGA 75 0.0012912719 17.598806 17 ATGCGAA 75 0.0012912719 17.598806 18 CCTATAC 90 2.2152675E-4 17.110788 3 CAACGCA 1675 0.0 17.074305 5 ATCAACG 1670 0.0 16.99369 3 TATCAAC 1715 0.0 16.934282 2 >>END_MODULE