##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062035_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2028169 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.293131390924522 32.0 32.0 32.0 32.0 32.0 2 31.444319975307778 32.0 32.0 32.0 32.0 32.0 3 31.560728420560615 32.0 32.0 32.0 32.0 32.0 4 31.64439304614162 32.0 32.0 32.0 32.0 32.0 5 31.61305788620179 32.0 32.0 32.0 32.0 32.0 6 35.258925661520315 36.0 36.0 36.0 36.0 36.0 7 35.26585358517954 36.0 36.0 36.0 36.0 36.0 8 35.21208587647282 36.0 36.0 36.0 36.0 36.0 9 35.30346830071853 36.0 36.0 36.0 36.0 36.0 10 35.18328995266174 36.0 36.0 36.0 36.0 36.0 11 35.30628907157145 36.0 36.0 36.0 36.0 36.0 12 35.23416687662616 36.0 36.0 36.0 36.0 36.0 13 35.26585703656845 36.0 36.0 36.0 36.0 36.0 14 35.23425858496013 36.0 36.0 36.0 36.0 36.0 15 35.20610412643128 36.0 36.0 36.0 36.0 36.0 16 35.2215949459833 36.0 36.0 36.0 36.0 36.0 17 35.20628951532146 36.0 36.0 36.0 36.0 36.0 18 35.19803083470855 36.0 36.0 36.0 36.0 36.0 19 35.18933284159259 36.0 36.0 36.0 36.0 36.0 20 35.19737802914846 36.0 36.0 36.0 36.0 36.0 21 35.188860001311525 36.0 36.0 36.0 36.0 36.0 22 35.16985270951287 36.0 36.0 36.0 36.0 36.0 23 35.14133289681481 36.0 36.0 36.0 36.0 36.0 24 35.128424702280725 36.0 36.0 36.0 36.0 36.0 25 35.11522807024464 36.0 36.0 36.0 36.0 36.0 26 35.07451450051746 36.0 36.0 36.0 36.0 36.0 27 35.065583785177665 36.0 36.0 36.0 36.0 36.0 28 35.046972416992865 36.0 36.0 36.0 36.0 36.0 29 35.03085097938091 36.0 36.0 36.0 36.0 36.0 30 35.0118851042492 36.0 36.0 36.0 36.0 36.0 31 35.00802447922239 36.0 36.0 36.0 36.0 36.0 32 34.98140736792644 36.0 36.0 36.0 36.0 36.0 33 34.97071447201885 36.0 36.0 36.0 36.0 36.0 34 34.96006989555604 36.0 36.0 36.0 36.0 36.0 35 34.95083693715859 36.0 36.0 36.0 36.0 36.0 36 34.92581584670705 36.0 36.0 36.0 36.0 36.0 37 34.913795152179134 36.0 36.0 36.0 36.0 36.0 38 34.90838386741933 36.0 36.0 36.0 36.0 36.0 39 34.88382131863765 36.0 36.0 36.0 32.0 36.0 40 34.8779598741525 36.0 36.0 36.0 32.0 36.0 41 34.84964566562254 36.0 36.0 36.0 32.0 36.0 42 34.82893782520096 36.0 36.0 36.0 32.0 36.0 43 34.82080438070003 36.0 36.0 36.0 32.0 36.0 44 34.7863526165719 36.0 36.0 36.0 32.0 36.0 45 34.7745996512125 36.0 36.0 36.0 32.0 36.0 46 34.75209659550067 36.0 36.0 36.0 32.0 36.0 47 34.72508947725757 36.0 36.0 36.0 32.0 36.0 48 34.70957203270536 36.0 36.0 36.0 32.0 36.0 49 34.68852842144811 36.0 36.0 36.0 32.0 36.0 50 34.280571786670635 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 10.0 21 38.0 22 122.0 23 332.0 24 849.0 25 2074.0 26 4380.0 27 8517.0 28 15025.0 29 23858.0 30 36528.0 31 54278.0 32 82831.0 33 141966.0 34 325246.0 35 1332111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.31235922139041 17.091454124976636 12.290764824570186 26.30542182906277 2 16.122347042775214 19.004204496202544 37.50650249720547 27.36694596381678 3 19.134467562255875 22.266416588024033 28.0198524575453 30.579263392174788 4 12.923824395304337 15.384319551279996 34.51684746192255 37.17500859149311 5 15.011372326467864 36.126871084214386 33.174700924824315 15.687055664493442 6 36.173944256069646 34.13505889800988 15.883849801323066 13.807147044597412 7 31.58706202491015 29.665624511566836 19.26718138379987 19.480132079723138 8 28.426132141848136 33.7369814842846 18.062104292097946 19.77478208176932 9 26.987839770748888 14.69749315762148 17.9523501246691 40.36231694696053 10 16.0463610738169 27.14150264746443 31.22499281370814 25.587143465010527 11 37.47266623244907 21.29901403679871 21.65268278925474 19.57563694149748 12 24.712191143834662 23.10073766042179 28.436683530810303 23.75038766493325 13 29.7364272898363 19.506017496569566 24.802617533351512 25.954937680242622 14 23.542367524599776 18.874166797737267 24.920457811947625 32.66300786571533 15 25.082229340848816 27.112533521614818 21.877318901925825 25.92791823561054 16 25.7295945510853 26.21580191179436 23.175440438981987 24.87916309813835 17 24.39505780829901 26.168233515057178 24.605050170868402 24.831658505775405 18 24.929308089521225 25.66366576322364 25.215724346170703 24.19130180108443 19 25.726948789770475 25.07389670190206 25.001713368067453 24.197441140260008 20 25.891864867076958 24.806302837144496 24.80161880240572 24.50021349337283 21 26.095803653443078 24.474045308847536 24.80187795001304 24.62827308769634 22 25.90597726323595 24.276823085255717 24.901277950703317 24.91592170080501 23 25.04448598167705 24.56691189630834 25.156902759979825 25.23169936203478 24 25.064221214843506 24.687473189799945 25.09612227127633 25.15218332408022 25 25.301319469884813 24.51918312285551 25.0884174496823 25.09107995757737 26 25.01015698958662 24.981017276743454 25.134308930261913 24.874516803408014 27 25.11217063742506 24.988462448721993 24.984419375197223 24.914947538655728 28 25.31978855471795 24.70109267766428 25.051759323950996 24.927359443666774 29 25.023075148065534 24.966077560108786 25.102309684264917 24.90853760756076 30 25.08974923464772 24.98181841490106 25.02575005509945 24.902682295351777 31 25.303723572104765 24.685626380561693 24.779997633322814 25.23065241401073 32 25.2034360276034 24.977516522397686 24.705742556292513 25.1133048937064 33 25.022853204033996 24.902843066776718 24.89589095940068 25.178412769788604 34 25.41031255593154 24.728360687503727 25.07355228831807 24.787774468246663 35 25.32931261968953 24.787788364254567 25.21137343922878 24.67152557682712 36 25.014052118073295 24.964647829268245 25.048418175256042 24.97288187740242 37 25.476989708776927 24.632864857189062 24.93249959568786 24.957645838346146 38 25.122770894718784 24.83906658619996 24.942460387896862 25.0957021311844 39 25.444344517877322 24.811010592873526 24.82752805997172 24.917116829277433 40 25.588092887860263 24.718144372797887 24.762667355630654 24.931095383711195 41 24.947020579386297 24.984148084013675 25.06856015296729 25.000271183632737 42 25.445154482608995 24.89812924666923 24.84980720491504 24.80690906580673 43 25.320107609804012 24.495036655575653 25.063558026653936 25.1212977079664 44 24.9598635162321 24.8528164569445 24.983481913928447 25.203838112894957 45 25.088172660139453 25.005731900875833 24.912098526568656 24.993996912416062 46 25.22244717033788 24.707044250789647 24.948647073499522 25.12186150537295 47 25.232367508240287 24.896987148354775 25.043574300654047 24.82707104275089 48 25.37121280106031 25.163430275501682 24.556502153265992 24.908854770172013 49 25.162838904618066 25.047803881310287 24.66256228803823 25.12679492603342 50 25.092548216782735 25.283265586263614 24.677535781694683 24.94665041525897 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 15.0 1 24.0 2 33.0 3 96.0 4 159.0 5 181.5 6 204.0 7 177.5 8 151.0 9 224.5 10 298.0 11 494.0 12 690.0 13 1213.0 14 1736.0 15 2542.0 16 3348.0 17 3187.5 18 3027.0 19 3060.0 20 3093.0 21 3763.0 22 4433.0 23 5589.0 24 6745.0 25 8749.0 26 10753.0 27 13387.0 28 16021.0 29 18936.5 30 21852.0 31 25717.5 32 29583.0 33 34494.5 34 39406.0 35 45690.5 36 51975.0 37 59431.0 38 66887.0 39 74615.0 40 82343.0 41 90587.0 42 98831.0 43 105928.5 44 113026.0 45 122138.5 46 131251.0 47 138916.0 48 146581.0 49 154140.5 50 161700.0 51 163331.0 52 164962.0 53 165013.0 54 165064.0 55 162041.5 56 159019.0 57 151687.5 58 144356.0 59 132444.0 60 120532.0 61 106138.5 62 91745.0 63 78548.5 64 65352.0 65 54568.5 66 43785.0 67 36695.0 68 29605.0 69 24422.5 70 19240.0 71 14990.5 72 10741.0 73 9181.5 74 7622.0 75 6126.5 76 4631.0 77 3837.5 78 3044.0 79 2558.0 80 2072.0 81 1560.5 82 1049.0 83 842.5 84 636.0 85 473.0 86 310.0 87 217.5 88 125.0 89 87.5 90 50.0 91 40.5 92 31.0 93 24.0 94 17.0 95 17.0 96 17.0 97 17.0 98 17.0 99 11.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02987916687416088 2 0.005029166701591436 3 3.4513889128568674E-4 4 0.0 5 0.0 6 9.86111117959105E-5 7 0.0 8 0.0 9 0.0 10 9.86111117959105E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0010847222297550156 17 0.0 18 9.86111117959105E-5 19 0.0 20 1.4791666769386574E-4 21 0.0 22 0.0 23 9.86111117959105E-5 24 0.0011340277856529708 25 2.958333353877315E-4 26 4.437500030815973E-4 27 4.437500030815973E-4 28 0.001577777788734568 29 6.409722266734183E-4 30 8.875000061631946E-4 31 4.437500030815973E-4 32 6.409722266734183E-4 33 3.4513889128568674E-4 34 9.86111117959105E-4 35 2.4652777948977624E-4 36 2.4652777948977624E-4 37 0.0016270833446325231 38 4.930555589795525E-5 39 6.409722266734183E-4 40 1.4791666769386574E-4 41 0.0011340277856529708 42 0.005374305592877122 43 0.00497986114569348 44 0.004388194474918017 45 0.0022680555713059415 46 0.0023173611272038967 47 0.001183333341550926 48 0.004289583363122107 49 0.004486805586713927 50 0.0018243055682243441 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2028169.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.137417605226744 #Duplication Level Percentage of deduplicated Percentage of total 1 70.69327585601816 37.5645812104273 2 15.743658508617653 16.731547136129947 3 5.827755359778006 9.29015610760867 4 2.653573520523004 5.640161772248103 5 1.434982648440759 3.812563612322544 6 0.8420986201918341 2.6848167627551227 7 0.569188035018476 2.117162761887263 8 0.4079036072195622 1.7339955455603406 9 0.29849684647696967 1.4275216426580992 >10 1.431378748690241 13.273001162273653 >50 0.06733763272214606 2.4120910921884087 >100 0.028577270120043435 2.6722748831337477 >500 0.0015866781637935295 0.5285369252551504 >1k 1.8666801926982458E-4 0.1115893855516633 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.4652777948977624E-4 2 0.0 0.0 0.0 0.0 2.4652777948977624E-4 3 0.0 0.0 0.0 0.0 2.4652777948977624E-4 4 0.0 0.0 0.0 0.0 2.4652777948977624E-4 5 0.0 0.0 0.0 0.0 2.4652777948977624E-4 6 0.0 0.0 0.0 0.0 3.94444447183642E-4 7 0.0 0.0 0.0 0.0 3.94444447183642E-4 8 0.0 0.0 0.0 0.0 3.94444447183642E-4 9 0.0 0.0 0.0 0.0 3.94444447183642E-4 10 0.0 0.0 0.0 4.930555589795525E-5 4.4375000308159723E-4 11 0.0 0.0 0.0 4.930555589795525E-5 4.4375000308159723E-4 12 0.0 0.0 0.0 4.930555589795525E-5 0.0012326388974488811 13 0.0 0.0 0.0 4.930555589795525E-5 0.0014791666769386575 14 0.0 0.0 0.0 4.930555589795525E-5 0.0014791666769386575 15 0.0 0.0 0.0 4.930555589795525E-5 0.0017256944564284337 16 0.0 0.0 0.0 4.930555589795525E-5 0.001775000012326389 17 0.0 0.0 0.0 4.930555589795525E-5 0.0018243055682243441 18 0.0 0.0 0.0 9.86111117959105E-5 0.00197222223591821 19 0.0 0.0 0.0 2.4652777948977624E-4 0.002021527791816165 20 0.0 0.0 0.0 2.958333353877315E-4 0.0022680555713059415 21 0.0 0.0 0.0 4.930555589795525E-4 0.002366666683101852 22 0.0 0.0 0.0 6.409722266734183E-4 0.002514583350795718 23 0.0 0.0 0.0 8.381944502652393E-4 0.002514583350795718 24 0.0 0.0 0.0 0.0010354166738570602 0.002514583350795718 25 0.0 0.0 0.0 0.0015284722328366127 0.002514583350795718 26 0.0 0.0 0.0 0.0019229166800202547 0.0027118055743875387 27 0.0 0.0 0.0 0.002514583350795718 0.002810416686183449 28 0.0 0.0 0.0 0.002958333353877315 0.0028597222420814043 29 0.0 0.0 0.0 0.0039937500277343755 0.0028597222420814043 30 0.0 0.0 0.0 0.005127777813387346 0.0028597222420814043 31 0.0 0.0 0.0 0.0077409722759789745 0.002958333353877315 32 0.0 0.0 0.0 0.010551388962162423 0.0030076389097752703 33 0.0 0.0 0.0 0.013756250095529514 0.0030569444656732255 34 0.0 0.0 0.0 0.018193750126345488 0.003352777801060957 35 0.0 0.0 0.0 0.02233541682177373 0.003352777801060957 36 0.0 0.0 0.0 0.027364583523365165 0.003352777801060957 37 0.0 0.0 0.0 0.03535208357883391 0.003352777801060957 38 0.0 0.0 0.0 0.04703750032664931 0.003352777801060957 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2170 0.0 27.885904 1 GGTATCA 865 0.0 26.965067 1 TCAACGC 3085 0.0 19.324968 4 ATCAACG 3175 0.0 18.777174 3 CAACGCA 3170 0.0 18.737394 5 GTATTAG 200 0.0 18.703835 1 TATCAAC 3200 0.0 18.630938 2 AACGCAG 3255 0.0 18.450848 6 CCGATCG 110 2.7994301E-6 17.999254 9 CGCGTAA 225 0.0 17.59927 10 GCGTAAC 230 0.0 17.216677 11 CGGATCG 150 1.8397259E-7 16.133062 26 TCGCGTA 260 0.0 16.076258 9 CCTAATA 205 1.8117134E-9 15.024138 2 GTATAAG 440 0.0 15.0030775 1 ACGCAGA 3970 0.0 14.961596 7 CGCAATA 195 1.5168553E-8 14.667143 36 ATCGATT 165 5.423153E-7 14.66642 29 CGCAGAG 4080 0.0 14.558221 8 GCATATA 395 0.0 14.483984 1 >>END_MODULE