##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062022_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 679859 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27394945128328 32.0 32.0 32.0 32.0 32.0 2 31.459237871382154 32.0 32.0 32.0 32.0 32.0 3 31.580364457924365 32.0 32.0 32.0 32.0 32.0 4 31.654282726271184 32.0 32.0 32.0 32.0 32.0 5 31.62263351665566 32.0 32.0 32.0 32.0 32.0 6 35.274073006314545 36.0 36.0 36.0 36.0 36.0 7 35.285978416112755 36.0 36.0 36.0 36.0 36.0 8 35.22962702560384 36.0 36.0 36.0 36.0 36.0 9 35.32782679938046 36.0 36.0 36.0 36.0 36.0 10 35.206704625517936 36.0 36.0 36.0 36.0 36.0 11 35.31459170210294 36.0 36.0 36.0 36.0 36.0 12 35.255941305476576 36.0 36.0 36.0 36.0 36.0 13 35.286719746300335 36.0 36.0 36.0 36.0 36.0 14 35.25273034555695 36.0 36.0 36.0 36.0 36.0 15 35.22061633368095 36.0 36.0 36.0 36.0 36.0 16 35.2411691247744 36.0 36.0 36.0 36.0 36.0 17 35.2228153190588 36.0 36.0 36.0 36.0 36.0 18 35.215418197008496 36.0 36.0 36.0 36.0 36.0 19 35.2088991982161 36.0 36.0 36.0 36.0 36.0 20 35.2072444433331 36.0 36.0 36.0 36.0 36.0 21 35.201337336124105 36.0 36.0 36.0 36.0 36.0 22 35.18188330227297 36.0 36.0 36.0 36.0 36.0 23 35.15881087107768 36.0 36.0 36.0 36.0 36.0 24 35.14483738539903 36.0 36.0 36.0 36.0 36.0 25 35.133871876374364 36.0 36.0 36.0 36.0 36.0 26 35.09148514618472 36.0 36.0 36.0 36.0 36.0 27 35.06984242320834 36.0 36.0 36.0 36.0 36.0 28 35.06277331034818 36.0 36.0 36.0 36.0 36.0 29 35.03210812830307 36.0 36.0 36.0 36.0 36.0 30 35.01186716657425 36.0 36.0 36.0 36.0 36.0 31 35.00943430917293 36.0 36.0 36.0 36.0 36.0 32 34.98665458573028 36.0 36.0 36.0 36.0 36.0 33 34.96356744560269 36.0 36.0 36.0 36.0 36.0 34 34.954783271237126 36.0 36.0 36.0 36.0 36.0 35 34.94095099130849 36.0 36.0 36.0 36.0 36.0 36 34.91635471472761 36.0 36.0 36.0 36.0 36.0 37 34.896602089550925 36.0 36.0 36.0 36.0 36.0 38 34.89531505797525 36.0 36.0 36.0 36.0 36.0 39 34.86655321176891 36.0 36.0 36.0 32.0 36.0 40 34.85702623632253 36.0 36.0 36.0 32.0 36.0 41 34.830406010658095 36.0 36.0 36.0 32.0 36.0 42 34.81151827070025 36.0 36.0 36.0 32.0 36.0 43 34.79746241500076 36.0 36.0 36.0 32.0 36.0 44 34.76732822541145 36.0 36.0 36.0 32.0 36.0 45 34.75034823397205 36.0 36.0 36.0 32.0 36.0 46 34.722489516208505 36.0 36.0 36.0 32.0 36.0 47 34.69909937207568 36.0 36.0 36.0 32.0 36.0 48 34.67080968259595 36.0 36.0 36.0 32.0 36.0 49 34.65423271590139 36.0 36.0 36.0 32.0 36.0 50 34.23969676065184 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 0.0 20 4.0 21 14.0 22 30.0 23 121.0 24 297.0 25 728.0 26 1566.0 27 2924.0 28 5025.0 29 8124.0 30 12290.0 31 18144.0 32 27866.0 33 46975.0 34 107416.0 35 448334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.69431606331213 17.55915464151132 12.360196993306523 26.386332301870024 2 16.13513907091889 18.744750549031895 38.07714541659496 27.042964963454256 3 20.011296509849146 21.23361417711986 27.718958132310373 31.036131180720623 4 13.323056692637739 15.033999696995995 34.1170742756954 37.525869334670865 5 14.986342756365659 36.0217339183566 33.287490494352504 15.704432830925235 6 36.63818527076938 33.615793863139274 15.526307660853206 14.219713205238143 7 31.771882110849454 29.464050634028528 18.577822754424076 20.18624450069794 8 27.906963061458335 34.51215619709381 17.858408875958105 19.722471865489755 9 26.25059019590827 15.722083549677212 18.37954634711021 39.64777990730431 10 16.78862823026539 27.13753881319509 30.806976152408073 25.266856804131443 11 37.096809779674906 21.54873289902759 21.217929011750964 20.136528309546538 12 24.603925225671794 23.304096878911658 28.391475291200084 23.70050260421646 13 30.126099676550577 19.592444904016862 24.20707823239819 26.07437718703437 14 22.764279063747043 19.28752873757647 25.32863431976336 32.61955787891313 15 25.04622281973174 27.187696272315286 21.86041517432291 25.905665733630062 16 25.33080729335208 26.189376511358354 23.696775180480458 24.783041014809108 17 24.258118227455988 26.292510652944213 25.013863168686452 24.43550795091335 18 24.362698736061446 25.70768350496206 25.66032074297759 24.269297015998905 19 25.467377011081727 25.160254053052256 25.358677841549266 24.013691094316755 20 25.33006989715469 25.045009531430185 25.48657362735638 24.138346944058743 21 25.363641578621447 24.468603048573307 25.483666466134892 24.684088906670354 22 25.02283561738537 24.935317470240154 25.289949827831947 24.751897084542527 23 24.648199111874668 24.911930267893784 25.423506933055233 25.016363687176312 24 24.574799038030168 24.93840598362886 25.461605783586204 25.025189194754766 25 24.984224623707632 24.748292655661412 25.453735123709837 24.813747596921118 26 24.50298298463204 25.205190510931725 25.53526040808642 24.756566096349815 27 24.739173090811743 25.27090255744958 25.250015812148728 24.739908539589944 28 24.88159187587887 25.24078770085254 25.08840159328795 24.78921882998064 29 24.567003258047674 25.367762243419552 25.300983297909113 24.76425120062366 30 24.960469279297964 25.177281492562344 25.160513112431985 24.701736115707707 31 24.93550085753706 24.91902673221015 25.283958026282114 24.861514383970675 32 24.663087445760095 25.343531661395897 25.19570493491211 24.797675957931897 33 24.69169941870043 25.127821185662846 25.378609587912738 24.80186980772399 34 24.90777350231228 25.026329414810373 25.328014497358232 24.737882585519117 35 24.652648052975767 25.213206287195266 25.48929335243536 24.644852307393602 36 24.6800793109129 25.190481513732323 25.446123885058014 24.68331529029677 37 24.96197668295467 24.921085069265686 25.25557258555614 24.861365662223502 38 24.574654450408097 25.35628711247479 25.151097506983067 24.917960930134043 39 24.86618470114951 25.060490839958522 25.256562061027722 24.81676239786425 40 25.11050085385352 24.95179147440866 25.141242522346545 24.79646514939127 41 24.80264057859737 24.85868227008565 25.48381924862948 24.8548579026875 42 24.733132990013722 25.27782558363598 25.25017173335216 24.738869692998133 43 24.821427520755005 24.877029165857646 25.56145894009732 24.740084373290028 44 24.572729719830726 25.222883653335572 25.510010458358522 24.69437616847518 45 24.781898173548893 25.093293598669103 25.333790301584337 24.791017926197668 46 24.902293330352244 25.114401749820914 25.12337443608138 24.85993048374546 47 24.785356748336763 25.201478563622214 25.42579308052229 24.58737160751873 48 24.7126867921975 25.304155579384936 25.329455910495668 24.6537017179219 49 24.863313627745313 25.210159434338326 25.123080249646605 24.803446688269755 50 24.826946102499683 25.707733810304102 24.964035972852674 24.50128411434354 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 160.0 1 95.5 2 31.0 3 53.5 4 76.0 5 93.0 6 110.0 7 91.5 8 73.0 9 102.5 10 132.0 11 249.5 12 367.0 13 674.5 14 982.0 15 1153.5 16 1325.0 17 1336.0 18 1347.0 19 1283.0 20 1219.0 21 1419.5 22 1620.0 23 2054.5 24 2489.0 25 3198.0 26 3907.0 27 4811.0 28 5715.0 29 6967.5 30 8220.0 31 9734.0 32 11248.0 33 13191.0 34 15134.0 35 17478.5 36 19823.0 37 22231.0 38 24639.0 39 26829.0 40 29019.0 41 31638.5 42 34258.0 43 36206.0 44 38154.0 45 41341.5 46 44529.0 47 46787.5 48 49046.0 49 50544.0 50 52042.0 51 52967.0 52 53892.0 53 53503.5 54 53115.0 55 51667.0 56 50219.0 57 47191.5 58 44164.0 59 40803.0 60 37442.0 61 33636.0 62 29830.0 63 25757.5 64 21685.0 65 18785.0 66 15885.0 67 12990.0 68 10095.0 69 8331.5 70 6568.0 71 5304.0 72 4040.0 73 3392.0 74 2744.0 75 2236.0 76 1728.0 77 1435.5 78 1143.0 79 991.5 80 840.0 81 651.5 82 463.0 83 318.0 84 173.0 85 127.0 86 81.0 87 60.5 88 40.0 89 25.5 90 11.0 91 12.0 92 13.0 93 10.0 94 7.0 95 6.5 96 6.0 97 7.0 98 8.0 99 5.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0355956161498193 2 0.003824322396261578 3 4.4126796879941283E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0010296252605319633 17 0.0 18 0.0 19 1.470893229331376E-4 20 4.4126796879941283E-4 21 0.0 22 0.0 23 0.0 24 5.883572917325504E-4 25 2.941786458662752E-4 26 4.4126796879941283E-4 27 2.941786458662752E-4 28 0.0010296252605319633 29 5.883572917325504E-4 30 0.0011767145834651008 31 7.35446614665688E-4 32 0.0013238039063982385 33 4.4126796879941283E-4 34 0.0016179825522645139 35 1.470893229331376E-4 36 4.4126796879941283E-4 37 0.001912161198130789 38 0.0 39 5.883572917325504E-4 40 0.0 41 0.0011767145834651008 42 0.003824322396261578 43 0.003383054427462165 44 0.002941786458662752 45 0.0023534291669302016 46 0.002647607812796477 47 0.001470893229331376 48 0.003824322396261578 49 0.002647607812796477 50 0.001912161198130789 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 679859.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.29475969836763 #Duplication Level Percentage of deduplicated Percentage of total 1 67.8462472437208 38.8723443226502 2 17.16129656826952 19.665047259828462 3 6.761728445828485 11.622348193480796 4 3.2816175755453285 7.5207796165123755 5 1.7730302804911044 5.07926719293336 6 1.0207776117426188 3.509112478216017 7 0.6078039971236232 2.4376788771233726 8 0.4076562631064643 1.868525410737552 9 0.2790734267211487 1.4390500429969404 >10 0.8444999996840884 7.126538253459263 >50 0.013169839816856396 0.5116218979085178 >100 0.0030987479499634944 0.34768645415310795 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.941786458662752E-4 2 0.0 0.0 0.0 0.0 2.941786458662752E-4 3 0.0 0.0 0.0 0.0 2.941786458662752E-4 4 0.0 0.0 0.0 0.0 2.941786458662752E-4 5 0.0 0.0 0.0 0.0 2.941786458662752E-4 6 0.0 0.0 0.0 0.0 5.883572917325504E-4 7 0.0 0.0 0.0 0.0 5.883572917325504E-4 8 0.0 0.0 0.0 0.0 5.883572917325504E-4 9 0.0 0.0 0.0 0.0 5.883572917325504E-4 10 0.0 0.0 0.0 0.0 7.35446614665688E-4 11 0.0 0.0 0.0 0.0 7.35446614665688E-4 12 0.0 0.0 0.0 0.0 0.0016179825522645136 13 0.0 0.0 0.0 0.0 0.0019121611981307888 14 0.0 0.0 0.0 0.0 0.0019121611981307888 15 0.0 0.0 0.0 0.0 0.002941786458662752 16 0.0 0.0 0.0 0.0 0.002941786458662752 17 0.0 0.0 0.0 1.470893229331376E-4 0.002941786458662752 18 0.0 0.0 0.0 4.4126796879941283E-4 0.0030888757815958896 19 0.0 0.0 0.0 7.35446614665688E-4 0.0030888757815958896 20 0.0 0.0 0.0 8.825359375988257E-4 0.003383054427462165 21 0.0 0.0 0.0 0.0013238039063982385 0.003383054427462165 22 0.0 0.0 0.0 0.0019121611981307888 0.003383054427462165 23 0.0 0.0 0.0 0.0032359651045290273 0.003383054427462165 24 0.0 0.0 0.0 0.004118501042127853 0.003383054427462165 25 0.0 0.0 0.0 0.004706858333860403 0.003383054427462165 26 0.0 0.0 0.0 0.005883572917325504 0.0035301437503953027 27 0.0 0.0 0.0 0.00676610885492433 0.0038243223962615776 28 0.0 0.0 0.0 0.008384091407188843 0.0038243223962615776 29 0.0 0.0 0.0 0.010737520574119046 0.0038243223962615776 30 0.0 0.0 0.0 0.013238039063982385 0.0038243223962615776 31 0.0 0.0 0.0 0.018827433335441613 0.003971411719194715 32 0.0 0.0 0.0 0.026034810159165356 0.004118501042127853 33 0.0 0.0 0.0 0.032359651045290275 0.004118501042127853 34 0.0 0.0 0.0 0.0391257599002146 0.004118501042127853 35 0.0 0.0 0.0 0.04765694063033658 0.004118501042127853 36 0.0 0.0 0.0 0.064130944798848 0.004118501042127853 37 0.0 0.0 0.0 0.07913405573802804 0.004118501042127853 38 0.0 0.0 0.0 0.10046200756333298 0.004265590365060991 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 30 0.005741531 29.33515 2 TAGGACG 80 1.3082172E-7 24.74971 4 GTATCAA 765 0.0 24.165464 1 GTCCTAA 150 0.0 23.475023 1 GGTATCA 340 0.0 23.302414 1 GGTACGA 60 2.871214E-4 21.999744 42 GTATACA 70 8.0989115E-4 18.86386 1 TATCAAC 1000 0.0 18.481142 2 GTATTAG 60 0.007393645 18.339865 1 GTCTAGG 120 3.1451236E-7 18.339865 1 GTGTAAG 180 1.4551915E-11 18.339863 1 TACGACC 60 0.0074093486 18.33312 44 GTACGAC 60 0.0074093486 18.33312 43 TTACACC 145 6.2937033E-9 18.206684 4 TAGGACA 185 2.1827873E-11 17.83763 4 ATCAACG 1020 0.0 17.687368 3 GTAGGAC 225 0.0 17.60109 3 CTATGAT 75 0.001290184 17.599794 32 GGACCGA 75 0.001290184 17.599794 6 TCAACGC 1020 0.0 17.470385 4 >>END_MODULE