##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062015_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1339455 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.271739625444678 32.0 32.0 32.0 32.0 32.0 2 31.427517161830746 32.0 32.0 32.0 32.0 32.0 3 31.557650686286586 32.0 32.0 32.0 32.0 32.0 4 31.63532182865419 32.0 32.0 32.0 32.0 32.0 5 31.60330059613798 32.0 32.0 32.0 32.0 32.0 6 35.234446845918676 36.0 36.0 36.0 36.0 36.0 7 35.241918541496354 36.0 36.0 36.0 36.0 36.0 8 35.18715447700744 36.0 36.0 36.0 36.0 36.0 9 35.273538118115205 36.0 36.0 36.0 36.0 36.0 10 35.15975975303388 36.0 36.0 36.0 36.0 36.0 11 35.2818370158012 36.0 36.0 36.0 36.0 36.0 12 35.20075403802293 36.0 36.0 36.0 36.0 36.0 13 35.234136271841905 36.0 36.0 36.0 36.0 36.0 14 35.19543993639204 36.0 36.0 36.0 36.0 36.0 15 35.17347876561736 36.0 36.0 36.0 36.0 36.0 16 35.18631607631462 36.0 36.0 36.0 36.0 36.0 17 35.16561735929912 36.0 36.0 36.0 36.0 36.0 18 35.16203157254257 36.0 36.0 36.0 36.0 36.0 19 35.15830543019362 36.0 36.0 36.0 36.0 36.0 20 35.154062659813135 36.0 36.0 36.0 36.0 36.0 21 35.151162226427914 36.0 36.0 36.0 36.0 36.0 22 35.13553870790732 36.0 36.0 36.0 36.0 36.0 23 35.10095822554696 36.0 36.0 36.0 36.0 36.0 24 35.08660835937004 36.0 36.0 36.0 36.0 36.0 25 35.06714596608322 36.0 36.0 36.0 36.0 36.0 26 35.02564550507483 36.0 36.0 36.0 36.0 36.0 27 35.015409252270516 36.0 36.0 36.0 36.0 36.0 28 34.997936474163 36.0 36.0 36.0 36.0 36.0 29 34.97595215964702 36.0 36.0 36.0 36.0 36.0 30 34.960993090473366 36.0 36.0 36.0 36.0 36.0 31 34.96411674897626 36.0 36.0 36.0 36.0 36.0 32 34.93449723954892 36.0 36.0 36.0 32.0 36.0 33 34.91859972899425 36.0 36.0 36.0 32.0 36.0 34 34.904401416994226 36.0 36.0 36.0 32.0 36.0 35 34.89258989663706 36.0 36.0 36.0 32.0 36.0 36 34.868864575517655 36.0 36.0 36.0 32.0 36.0 37 34.85372856870892 36.0 36.0 36.0 32.0 36.0 38 34.84062323855598 36.0 36.0 36.0 32.0 36.0 39 34.83200107506411 36.0 36.0 36.0 32.0 36.0 40 34.81570489490129 36.0 36.0 36.0 32.0 36.0 41 34.79291652201828 36.0 36.0 36.0 32.0 36.0 42 34.7658390912722 36.0 36.0 36.0 32.0 36.0 43 34.76101399449776 36.0 36.0 36.0 32.0 36.0 44 34.71439503380106 36.0 36.0 36.0 32.0 36.0 45 34.70032289251972 36.0 36.0 36.0 32.0 36.0 46 34.681288285160754 36.0 36.0 36.0 32.0 36.0 47 34.66382446592084 36.0 36.0 36.0 32.0 36.0 48 34.6393503327846 36.0 36.0 36.0 32.0 36.0 49 34.61881212881359 36.0 36.0 36.0 32.0 36.0 50 34.19885550466421 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 11.0 21 34.0 22 96.0 23 243.0 24 622.0 25 1517.0 26 3280.0 27 6130.0 28 10478.0 29 16706.0 30 25083.0 31 37337.0 32 57294.0 33 97875.0 34 224312.0 35 858432.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.1244715418618 17.409899801125732 12.231252758512275 26.23437589850019 2 16.407144766333232 19.43509936642611 36.83329525618455 27.32446061105611 3 18.786325462707538 22.620726520452752 28.104009621838166 30.48893839500154 4 12.949455524415171 15.400304900354922 34.36758559831095 37.28265397691896 5 15.239631043969377 36.10013027686634 32.64775599030949 16.012482688854796 6 36.163595261345684 34.08699975811003 15.82341136524489 13.925993615299392 7 31.701550257380802 29.66557293824727 19.449402928803135 19.183473875568797 8 28.70577958945989 32.91226655617396 18.432272827381286 19.949681026984855 9 26.981496205546286 14.37875852492245 18.019940946131076 40.61980432340019 10 16.559284604025223 26.509980932529224 30.46756364906895 26.463170814376603 11 38.02180737688089 21.108659865393015 21.288359817985672 19.581172939740416 12 24.920434057135175 23.046089640936053 28.00146328170786 24.03201302022091 13 29.60599646871302 19.108592673886022 24.753127204721324 26.532283652679634 14 23.765859995296594 19.071413373349607 24.4621879794394 32.70053865191439 15 25.41197725940774 26.791418897984627 21.656121332930184 26.140482509677444 16 26.40117839939557 25.72731670752939 22.73137212156686 25.140132771508178 17 24.689817873687435 25.716728072238336 24.545878734261322 25.04757531981291 18 25.300775764435183 24.965489643906878 25.356470141169567 24.37726445048837 19 25.82709073995822 24.747695702875948 24.775318898595994 24.649894658569835 20 25.965209600955617 24.20403897121953 24.446899846952107 25.383851580872747 21 26.848606336159108 23.996700150434318 24.355726769469673 24.7989667439369 22 26.32943995878921 23.81647759723171 24.698328797906612 25.15575364607247 23 24.844544750730336 24.082815895742517 25.185728801234536 25.886910552292612 24 25.218953933630324 24.53889208674988 24.987289435785335 25.25486454383446 25 25.286759919011416 24.046024929672523 24.98350066594597 25.68371448537009 26 25.154541273718728 24.81231074293291 25.163425530517046 24.869722452831315 27 25.46364283170592 24.437622391927416 24.65188992173636 25.446844854630307 28 25.167720597567623 24.33811397385455 25.138454417177456 25.355711011400373 29 25.10244930168734 24.620009959363706 25.08945882728866 25.188081911660294 30 25.07855947786784 24.72228879277843 25.06019347021235 25.13895825914138 31 25.53322378563691 24.415971665918846 24.399696292574475 25.651108255869776 32 25.50375605291174 24.225234762639257 24.527301748942467 25.743707435506536 33 25.015192803016163 24.176266377990967 24.928814065474636 25.879726753518234 34 25.716920067639954 24.25288085737003 24.946078413074073 25.084120661915943 35 26.068123381800916 24.245512343854053 24.865616685032386 24.820747589312646 36 24.92985927059614 24.870207921161672 24.780320280712232 25.419612527529956 37 25.96442215302192 24.37755192697784 24.482820664626495 25.175205255373744 38 25.316042718867003 24.148926242389628 24.9440257418129 25.59100529693047 39 25.718786512324133 24.166875086323067 24.58473472221704 25.52960367913576 40 25.791274497873385 24.333291276364307 24.8819480788053 24.993486146957004 41 24.962054952939184 24.793327345743023 25.14093607986042 25.103681621457376 42 26.171044684074214 24.60390284765873 24.61219025803711 24.61286221022995 43 25.658187975633812 23.973325309822254 24.782271425126382 25.586215289417552 44 25.181276280581038 24.598175888761467 24.646033424120795 25.574514406536696 45 25.261959422886687 24.803777740448325 24.567706291878977 25.366556544786008 46 25.24803590799919 24.485618060911303 24.746775290554215 25.51957074053529 47 25.37198436956395 24.46712725784993 25.04050206131228 25.120386311273833 48 26.07568607160962 24.874402811405993 24.079943198489474 24.96996791849491 49 25.364210771515367 25.069900545242916 24.24699660968357 25.318892073558146 50 25.533659043534872 24.858372802799995 24.32889463593523 25.279073517729906 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 152.0 1 104.5 2 57.0 3 123.5 4 190.0 5 206.0 6 222.0 7 172.5 8 123.0 9 176.0 10 229.0 11 429.0 12 629.0 13 1109.0 14 1589.0 15 2056.0 16 2523.0 17 2411.0 18 2299.0 19 2168.5 20 2038.0 21 2430.5 22 2823.0 23 3528.5 24 4234.0 25 5447.5 26 6661.0 27 8215.5 28 9770.0 29 11373.5 30 12977.0 31 15049.5 32 17122.0 33 19866.5 34 22611.0 35 26616.5 36 30622.0 37 36186.5 38 41751.0 39 47319.0 40 52887.0 41 57994.5 42 63102.0 43 67563.5 44 72025.0 45 79944.5 46 87864.0 47 93745.0 48 99626.0 49 103612.5 50 107599.0 51 105183.0 52 102767.0 53 102786.5 54 102806.0 55 103328.5 56 103851.0 57 100555.0 58 97259.0 59 89750.0 60 82241.0 61 72676.5 62 63112.0 63 55240.5 64 47369.0 65 39614.5 66 31860.0 67 27189.5 68 22519.0 69 19868.0 70 17217.0 71 13309.0 72 9401.0 73 8358.0 74 7315.0 75 5477.0 76 3639.0 77 3094.0 78 2549.0 79 2092.5 80 1636.0 81 1293.5 82 951.0 83 826.5 84 702.0 85 505.5 86 309.0 87 220.0 88 131.0 89 85.5 90 40.0 91 29.0 92 18.0 93 14.5 94 11.0 95 10.5 96 10.0 97 10.5 98 11.0 99 8.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.031206722136988548 2 0.005151348869502895 3 1.4931445998559115E-4 4 7.465722999279557E-5 5 0.0 6 2.2397168997838676E-4 7 0.0 8 0.0 9 0.0 10 7.465722999279557E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.212295299207513E-4 17 0.0 18 1.4931445998559115E-4 19 7.465722999279557E-5 20 3.732861499639779E-4 21 0.0 22 0.0 23 1.4931445998559115E-4 24 0.0013438301398703203 25 5.226006099495691E-4 26 5.226006099495691E-4 27 5.972578399423646E-4 28 0.0018664307498198894 29 8.95886759913547E-4 30 0.001791773519827094 31 5.972578399423646E-4 32 0.0012691729098775247 33 3.732861499639779E-4 34 7.465722999279558E-4 35 2.2397168997838676E-4 36 3.732861499639779E-4 37 0.001941087979812685 38 0.0 39 7.465722999279558E-4 40 1.4931445998559115E-4 41 0.0013438301398703203 42 0.0055246350194668725 43 0.004330119339582144 44 0.0047034054895461214 45 0.0022397168997838673 46 0.0023890313597694584 47 0.0012691729098775247 48 0.004031490419610962 49 0.00388217595962537 50 0.0017171162898342984 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1339455.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.34929384783377 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21307401565636 44.85464564466248 2 13.056497405938087 14.975618127132453 3 3.809618319525631 6.554367613636983 4 1.5855744224133068 3.6372629387436017 5 0.8610999346110457 2.4691736591179656 6 0.5465723522543132 1.8807323063120593 7 0.36570650520779724 1.468110688045842 8 0.24948135912146868 1.1446063819051242 9 0.18667553785642646 0.9635139247257556 >10 0.9928604877729702 10.194180137097444 >50 0.07153706279021084 2.854866220038975 >100 0.05514616745857481 6.334262602455578 >500 0.004846550799415217 1.8178436998869425 >1k 0.0013098785944365453 0.8508160562386673 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1375 0.10265369124009394 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 7.465722999279557E-5 0.0 0.0 0.0 0.0 3 7.465722999279557E-5 0.0 0.0 0.0 0.0 4 7.465722999279557E-5 0.0 0.0 0.0 0.0 5 7.465722999279557E-5 0.0 0.0 0.0 0.0 6 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 7 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 8 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 9 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 10 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 11 7.465722999279557E-5 0.0 0.0 0.0 7.465722999279557E-5 12 7.465722999279557E-5 0.0 0.0 0.0 2.2397168997838674E-4 13 7.465722999279557E-5 0.0 0.0 0.0 2.2397168997838674E-4 14 7.465722999279557E-5 0.0 0.0 0.0 2.2397168997838674E-4 15 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 16 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 17 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 18 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 19 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 20 7.465722999279557E-5 0.0 0.0 1.4931445998559115E-4 3.732861499639779E-4 21 7.465722999279557E-5 0.0 0.0 2.986289199711823E-4 3.732861499639779E-4 22 7.465722999279557E-5 0.0 0.0 3.732861499639779E-4 3.732861499639779E-4 23 7.465722999279557E-5 0.0 0.0 3.732861499639779E-4 3.732861499639779E-4 24 1.4931445998559115E-4 0.0 0.0 8.212295299207513E-4 3.732861499639779E-4 25 1.4931445998559115E-4 0.0 0.0 9.705439899063425E-4 3.732861499639779E-4 26 1.4931445998559115E-4 0.0 0.0 0.001567801829848707 4.4794337995677347E-4 27 1.4931445998559115E-4 0.0 0.0 0.0017171162898342984 5.226006099495691E-4 28 2.2397168997838674E-4 0.0 0.0 0.002314374129776663 5.972578399423646E-4 29 2.2397168997838674E-4 0.0 0.0 0.0035835470396541878 5.972578399423646E-4 30 2.2397168997838674E-4 0.0 0.0 0.005449977789474077 5.972578399423646E-4 31 2.2397168997838674E-4 0.0 0.0 0.00910818205912106 5.972578399423646E-4 32 2.2397168997838674E-4 0.0 0.0 0.013587615858688794 6.719150699351602E-4 33 2.2397168997838674E-4 0.0 0.0 0.018664307498198893 6.719150699351602E-4 34 2.2397168997838674E-4 0.0 0.0 0.02396497082768738 6.719150699351602E-4 35 2.986289199711823E-4 0.0 0.0 0.029414948617161457 6.719150699351602E-4 36 2.986289199711823E-4 0.0 0.0 0.036208756546505856 6.719150699351602E-4 37 2.986289199711823E-4 0.0 0.0 0.04778062719538917 6.719150699351602E-4 38 2.986289199711823E-4 0.0 0.0 0.06457850394376817 7.465722999279558E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 1545 0.0 26.920135 1 GGTATCA 610 0.0 26.695976 1 TTAGTAC 85 6.1172505E-6 20.704706 3 AACGAAT 65 4.933194E-4 20.307297 31 CGCAATA 350 0.0 19.486061 36 CTAGCGG 350 0.0 19.485334 29 CTATAGG 310 0.0 19.16664 1 GCGCAAT 370 0.0 19.026657 35 CGCCGGT 370 0.0 19.025946 7 TATAGGG 290 0.0 18.965855 2 TCTAGCG 360 0.0 18.944075 28 TACGAAT 350 0.0 18.858889 41 GTCCTAA 180 1.4551915E-11 18.338453 1 CCGTCGT 325 0.0 18.275885 9 GTATAGG 170 1.2551027E-10 18.122707 1 TAGCGGC 380 0.0 17.947018 30 TCAACGC 2335 0.0 17.900482 4 ACCGTCG 320 0.0 17.873983 8 ATACGAA 370 0.0 17.839489 40 CAATACG 370 0.0 17.839489 38 >>END_MODULE