FastQCFastQC Report
Thu 2 Feb 2017
SRR4062009_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062009_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15958
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATGGTGACTGGAGGTGCTAACTTGGGAAGAATTGGTGTAATCACCA330.20679283118185238No Hit
CATCAAAAGAGCCGGGATGTCTCTCTCTGTTGGTGATTACACCAATTCTT220.13786188745456826No Hit
TTGTTACCCTTGCCAATAACAAAAATGTTGGACAGCCGAGTGGCAAAGCT220.13786188745456826No Hit
GTATTACACCGGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATC190.11906253916530894No Hit
CTTCAGCAATGGTGAGGCGGATTCCTTTTCCTCTGGGAAGAGAGATCCAT190.11906253916530894No Hit
GTCTCCTAGAGACCATTTCACCCACTGCTCTGTTTGGCCGCAAGCCTCTT170.10652964030580274No Hit
GCCTAGAAAGGCTTGTACAAACACTTTTCCAGCATGTCTCCTAGAGACCA170.10652964030580274No Hit
GTTTGTTACCCTTGCCAATAACAAAAATGTTGGACAGCCGAGTGGCAAAG170.10652964030580274No Hit
ATACACAGGTTCCCAGTGTCAAACTTGATGAAGTCAGTTATTTTGCCTGT160.10026319087604962No Hit
GTTTAATCTAGCATGTATGTTGCCTAGAAAGGCTTGTACAAACACTTTTC160.10026319087604962No Hit
CTCCTAGAGACCATTTCACCCACTGCTCTGTTTGGCCGCAAGCCTCTTGT160.10026319087604962No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)