FastQCFastQC Report
Thu 2 Feb 2017
SRR4062003_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062003_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1556555
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA9450.033.5312771
GTATCAA23100.025.8152711
ATACCGT3150.021.650056
TAGGACG1700.020.7051724
CGCAATA2350.020.595736
ACCGTCG3100.019.8702858
GTGTTAT1352.59206E-919.5599121
TACCGTC3600.018.9437947
TATGCGC851.4315438E-418.11702510
GTCCTAA3000.017.603921
TATCAAC33500.017.5993962
CGTCGTA3250.017.59939610
TACACCG902.2164677E-417.1105235
TCAACGC34400.016.8191914
ATCAACG34800.016.562653
CGCAACT1206.41101E-616.49943415
CCGTCGT3650.016.2734159
CAACGCA35750.016.1225225
ACGCAAC1105.6245637E-515.99945114
AACGCAG36350.015.8564026
Produced by FastQC (version 0.11.5)