##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061998_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1427867 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28484445680165 32.0 32.0 32.0 32.0 32.0 2 31.466671615773738 32.0 32.0 32.0 32.0 32.0 3 31.5867024029549 32.0 32.0 32.0 32.0 32.0 4 31.663682261723256 32.0 32.0 32.0 32.0 32.0 5 31.63317171697364 32.0 32.0 32.0 32.0 32.0 6 35.29153485583741 36.0 36.0 36.0 36.0 36.0 7 35.29110904587052 36.0 36.0 36.0 36.0 36.0 8 35.23890040178812 36.0 36.0 36.0 36.0 36.0 9 35.320140461261445 36.0 36.0 36.0 36.0 36.0 10 35.21021285595927 36.0 36.0 36.0 36.0 36.0 11 35.3247116152975 36.0 36.0 36.0 36.0 36.0 12 35.240399140816336 36.0 36.0 36.0 36.0 36.0 13 35.28593909656852 36.0 36.0 36.0 36.0 36.0 14 35.23871130854624 36.0 36.0 36.0 36.0 36.0 15 35.218371879173624 36.0 36.0 36.0 36.0 36.0 16 35.22928956268336 36.0 36.0 36.0 36.0 36.0 17 35.21273970194703 36.0 36.0 36.0 36.0 36.0 18 35.20930310736224 36.0 36.0 36.0 36.0 36.0 19 35.194315717080094 36.0 36.0 36.0 36.0 36.0 20 35.193536232716355 36.0 36.0 36.0 36.0 36.0 21 35.180915309339035 36.0 36.0 36.0 36.0 36.0 22 35.16999692548396 36.0 36.0 36.0 36.0 36.0 23 35.13810600006863 36.0 36.0 36.0 36.0 36.0 24 35.12223197258568 36.0 36.0 36.0 36.0 36.0 25 35.09824234329948 36.0 36.0 36.0 36.0 36.0 26 35.065227363613 36.0 36.0 36.0 36.0 36.0 27 35.05274160688636 36.0 36.0 36.0 36.0 36.0 28 35.02761041469549 36.0 36.0 36.0 36.0 36.0 29 35.00713721936287 36.0 36.0 36.0 36.0 36.0 30 34.982070458943305 36.0 36.0 36.0 36.0 36.0 31 34.989797369082694 36.0 36.0 36.0 36.0 36.0 32 34.95690775121212 36.0 36.0 36.0 36.0 36.0 33 34.94442619655752 36.0 36.0 36.0 36.0 36.0 34 34.92579420912452 36.0 36.0 36.0 36.0 36.0 35 34.91478968279259 36.0 36.0 36.0 36.0 36.0 36 34.8906109602645 36.0 36.0 36.0 32.0 36.0 37 34.87197126903276 36.0 36.0 36.0 32.0 36.0 38 34.85329866157002 36.0 36.0 36.0 32.0 36.0 39 34.835641554850696 36.0 36.0 36.0 32.0 36.0 40 34.82295409866605 36.0 36.0 36.0 32.0 36.0 41 34.79326786038195 36.0 36.0 36.0 32.0 36.0 42 34.76463774287101 36.0 36.0 36.0 32.0 36.0 43 34.77058787688209 36.0 36.0 36.0 32.0 36.0 44 34.7080533411025 36.0 36.0 36.0 32.0 36.0 45 34.696761673181044 36.0 36.0 36.0 32.0 36.0 46 34.66529165531524 36.0 36.0 36.0 32.0 36.0 47 34.64366289017114 36.0 36.0 36.0 32.0 36.0 48 34.61443607843027 36.0 36.0 36.0 32.0 36.0 49 34.608083245848526 36.0 36.0 36.0 32.0 36.0 50 34.19116696443016 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 5.0 20 11.0 21 36.0 22 104.0 23 249.0 24 654.0 25 1565.0 26 3289.0 27 6260.0 28 10987.0 29 17349.0 30 26081.0 31 38969.0 32 59052.0 33 101103.0 34 233861.0 35 928290.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.37971883006292 17.59319262459603 12.018343931909433 26.008744613431624 2 16.37881162794281 19.383009689018504 37.050025143542314 27.188153539496373 3 18.89756776044727 22.850123366350086 28.037533065193323 30.214775808009325 4 12.481221964261326 15.381846323006727 35.23995615832029 36.896975554411654 5 14.865740296540226 36.33139501087987 32.7807141701573 16.022150522422606 6 35.68668208361289 34.782745719836456 15.899531188500882 13.631041008049774 7 31.48997770800782 29.742616083991013 19.51253162934643 19.254874578654736 8 28.71983174903545 32.87372003134746 18.479382183354613 19.92706603626248 9 27.12059316448941 14.017411985850222 18.34652667230211 40.51546817735826 10 16.54831997658045 25.989185267255284 30.19321827593186 27.269276480232403 11 37.967261656722926 20.945438195574237 21.582192178963446 19.505107968739384 12 24.96731138124209 23.1422114244534 28.017105234591178 23.873371959713335 13 29.435724755877125 18.815337843090425 25.21971584188163 26.529221559150816 14 23.87813430802729 19.307190375574194 24.275720357708387 32.538954958690134 15 25.470369439170454 27.14216380097026 21.537650215321175 25.84981654453811 16 26.355234047202337 25.6057171151372 23.164359356320293 24.874689481340166 17 24.20218409697822 25.993527408365065 24.588984828418894 25.21530366623782 18 25.30844959649603 24.593677142198818 25.865924487364722 24.231948773940427 19 26.044862721808126 24.483722923773712 24.88971311753826 24.581701236879905 20 26.128206977840314 23.959021278652084 24.499829465431908 25.412942278075697 21 27.246604373239506 23.718262077814025 24.179930049458424 24.855203499488045 22 26.311204054719383 23.861466088928452 24.8454512920321 24.981878564320066 23 24.557049080901795 23.950970223417166 25.380865304681738 26.111115390999302 24 25.080312664363447 24.605054987999498 25.173039036822313 25.141593310814734 25 25.28043656849432 23.977790586351773 25.21096211611338 25.53081072904053 26 24.603584252484666 25.214359701286615 25.628686906321853 24.553369139906867 27 25.36538869625447 24.44268112557017 24.994134591343848 25.19779558683151 28 25.01698371944156 24.209329069544307 25.456599418141273 25.31708779287286 29 24.64984287664258 24.411654091895628 25.47156266830268 25.466940363159107 30 24.65292149649087 24.786129046039246 25.649526875078354 24.91142258239153 31 25.429260370217595 24.394707335367606 24.553546103512733 25.622486190902066 32 25.416935425696796 24.379928270228362 24.463129762812716 25.74000654126213 33 24.85828462414435 24.211653507131643 25.10893909915664 25.821122769567367 34 25.61954820342402 24.414243743237233 25.315455701034068 24.650752352304682 35 26.092629334887167 24.166254045381105 25.40313741584452 24.33797920388721 36 24.633280130208753 24.85283931699234 24.91362954797421 25.6002510048247 37 25.95910471886945 24.510134874867106 24.776270763852022 24.754489642411414 38 25.173282945820585 24.08039404230226 25.187569990762444 25.55875302111471 39 25.892664546944378 24.074419060692225 24.456249212107632 25.576667180255768 40 26.03980491139212 24.49925202960506 24.92079077559207 24.540152283410745 41 24.632542191026936 24.85889634142498 25.668224485608093 24.84033698193999 42 26.315262345084555 24.969550950941837 24.76097759132088 23.954209112652727 43 25.568407450597245 23.802830218412176 25.236079156467444 25.392683174523135 44 24.731336426186154 24.74394316322643 24.833941258208387 25.690779152379033 45 25.14756596695979 24.94243036315095 24.65395185441465 25.256051815474606 46 24.91229741209956 24.731604517882644 24.739728694521855 25.61636937549594 47 25.417410207780637 24.53342503284654 25.070035269761853 24.97912948961097 48 26.18753628811697 25.092361793489186 23.700438924253874 25.019662994139974 49 25.197068779192616 25.23369853361918 24.30660855399317 25.262624133195033 50 25.413177125136045 25.222259107825955 24.16100425958687 25.203559507451125 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 266.0 1 164.5 2 63.0 3 156.0 4 249.0 5 265.5 6 282.0 7 224.5 8 167.0 9 221.0 10 275.0 11 479.0 12 683.0 13 1258.5 14 1834.0 15 2408.5 16 2983.0 17 2888.0 18 2793.0 19 2666.0 20 2539.0 21 2905.0 22 3271.0 23 3894.0 24 4517.0 25 5947.0 26 7377.0 27 9690.0 28 12003.0 29 14192.0 30 16381.0 31 18287.0 32 20193.0 33 23352.0 34 26511.0 35 31482.0 36 36453.0 37 43176.0 38 49899.0 39 54734.0 40 59569.0 41 64482.0 42 69395.0 43 71220.5 44 73046.0 45 81000.5 46 88955.0 47 95292.5 48 101630.0 49 106517.0 50 111404.0 51 108309.5 52 105215.0 53 105254.5 54 105294.0 55 107461.5 56 109629.0 57 106043.5 58 102458.0 59 94662.5 60 86867.0 61 76744.5 62 66622.0 63 57492.0 64 48362.0 65 40714.5 66 33067.0 67 29005.5 68 24944.0 69 22636.5 70 20329.0 71 15703.0 72 11077.0 73 9958.0 74 8839.0 75 6336.0 76 3833.0 77 3448.5 78 3064.0 79 2671.5 80 2279.0 81 1820.0 82 1361.0 83 1172.5 84 984.0 85 771.0 86 558.0 87 373.0 88 188.0 89 135.5 90 83.0 91 56.0 92 29.0 93 22.5 94 16.0 95 13.5 96 11.0 97 11.5 98 12.0 99 10.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03319636912961781 2 0.004552244711867422 3 4.202072041723774E-4 4 1.4006906805745915E-4 5 0.0 6 7.003453402872958E-5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 9.80483476402214E-4 17 0.0 18 0.0 19 0.0 20 2.801381361149183E-4 21 7.003453402872958E-5 22 0.0 23 0.0 24 7.003453402872956E-4 25 2.801381361149183E-4 26 7.003453402872956E-4 27 2.801381361149183E-4 28 0.0020310014868331577 29 5.602762722298366E-4 30 0.0014006906805745913 31 2.801381361149183E-4 32 5.602762722298366E-4 33 3.501726701436478E-4 34 8.404144083447548E-4 35 2.801381361149183E-4 36 4.202072041723774E-4 37 0.001750863350718239 38 0.0 39 4.90241738201107E-4 40 2.101036020861887E-4 41 0.0011205525444596732 42 0.005042486450068529 43 0.004342141109781233 44 0.004132037507695045 45 0.0021710705548906163 46 0.002101036020861887 47 0.0010505180104309435 48 0.004062002973666315 49 0.0046222792458961515 50 0.0020310014868331577 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1427867.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.66209214115734 #Duplication Level Percentage of deduplicated Percentage of total 1 70.2348281425132 30.66599537876761 2 15.587517972338194 13.611672919203524 3 5.716914254852902 7.488373108754496 4 2.722089067445947 4.754084147170479 5 1.5076320266252279 3.2913184230735233 6 0.8897182605096313 2.3308176402025054 7 0.6000364811153576 1.833919368856019 8 0.42532652542083765 1.4856516754402331 9 0.32244263897416464 1.2670668191815115 >10 1.7404016799456485 13.826035640311673 >50 0.1364739055447719 4.113247198391334 >100 0.09871490865178507 8.616246486119525 >500 0.013549075939013808 3.972396002635664 >1k 0.004355060123254439 2.743175191891885 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2350 0.1645811549675145 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 1992 0.1395087917852293 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1923 0.13467640893724694 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 1922 0.1346063744032182 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 1847 0.1293537843510635 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1827 0.1279530936704889 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1771 0.12403115976488006 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1769 0.1238910906968226 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1647 0.1153468775453176 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA 1514 0.10603228451949658 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1506 0.10547200824726673 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.8013813611491825E-4 2 0.0 0.0 0.0 0.0 2.8013813611491825E-4 3 0.0 0.0 0.0 0.0 2.8013813611491825E-4 4 0.0 0.0 0.0 7.003453402872956E-5 2.8013813611491825E-4 5 0.0 0.0 0.0 7.003453402872956E-5 2.8013813611491825E-4 6 0.0 0.0 0.0 7.003453402872956E-5 4.90241738201107E-4 7 0.0 0.0 0.0 7.003453402872956E-5 4.90241738201107E-4 8 0.0 0.0 0.0 7.003453402872956E-5 4.90241738201107E-4 9 0.0 0.0 0.0 1.4006906805745913E-4 4.90241738201107E-4 10 0.0 0.0 0.0 1.4006906805745913E-4 4.90241738201107E-4 11 0.0 0.0 0.0 1.4006906805745913E-4 4.90241738201107E-4 12 0.0 0.0 0.0 1.4006906805745913E-4 0.0011905870784884027 13 0.0 0.0 0.0 1.4006906805745913E-4 0.0011905870784884027 14 0.0 0.0 0.0 1.4006906805745913E-4 0.0012606216125171322 15 0.0 0.0 0.0 1.4006906805745913E-4 0.0014006906805745913 16 0.0 0.0 0.0 2.101036020861887E-4 0.0015407597486320505 17 0.0 0.0 0.0 2.8013813611491825E-4 0.0015407597486320505 18 0.0 0.0 0.0 2.8013813611491825E-4 0.0016808288166895095 19 0.0 0.0 0.0 2.8013813611491825E-4 0.0017508633507182392 20 0.0 0.0 0.0 2.8013813611491825E-4 0.0018909324187756983 21 0.0 0.0 0.0 3.501726701436478E-4 0.0020310014868331573 22 0.0 0.0 0.0 4.202072041723774E-4 0.0020310014868331573 23 0.0 0.0 0.0 5.602762722298365E-4 0.0020310014868331573 24 0.0 0.0 0.0 8.404144083447548E-4 0.0020310014868331573 25 0.0 0.0 0.0 0.0013306561465458618 0.0020310014868331573 26 0.0 0.0 0.0 0.0017508633507182392 0.0023811741569768055 27 0.0 0.0 0.0 0.001960966952804428 0.0024512086910055348 28 0.0 0.0 0.0 0.0024512086910055348 0.0024512086910055348 29 0.0 0.0 0.0 0.003361657633379019 0.0024512086910055348 30 0.0 0.0 0.0 0.006303108062585661 0.0024512086910055348 31 0.0 0.0 0.0 0.012606216125171321 0.0024512086910055348 32 0.0 0.0 0.0 0.01778877164329731 0.0024512086910055348 33 0.0 0.0 0.0 0.023741707035739322 0.0024512086910055348 34 0.0 0.0 0.0 0.029554573360123876 0.0025212432250342645 35 0.0 0.0 0.0 0.035997750490767 0.002591277759062994 36 0.0 0.0 0.0 0.04461199817630073 0.002591277759062994 37 0.0 0.0 0.0 0.0570781452334146 0.002591277759062994 38 0.0 0.0 0.0 0.07458677874059699 0.0026613122930917235 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGATCG 30 0.0057468093 29.331816 5 GTATCAA 1985 0.0 28.495127 1 GGTATCA 865 0.0 23.662725 1 CGCAATA 445 0.0 22.248377 36 TATGCCG 65 4.9344864E-4 20.306643 5 AACGCAG 2895 0.0 19.681192 6 ATACGAA 505 0.0 19.605692 40 TCAACGC 2900 0.0 19.419685 4 TAGGACG 330 0.0 19.332333 4 CGTCTAT 80 8.962204E-5 19.25777 1 CAACGCA 2980 0.0 19.045996 5 TACGAAT 520 0.0 19.040142 41 GCGCAAT 520 0.0 19.03881 35 ATCAACG 2970 0.0 19.036053 3 GTCCTAC 400 0.0 18.707548 1 CTAGCGG 535 0.0 18.504364 29 TAACGAT 60 0.0074149542 18.332386 4 CGAATGC 545 0.0 18.168016 43 GCAATAC 550 0.0 18.00096 37 CAATACG 550 0.0 18.00096 38 >>END_MODULE