##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061997_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3286734 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.20372929479538 32.0 32.0 32.0 32.0 32.0 2 31.26291662178929 32.0 32.0 32.0 32.0 32.0 3 31.46951502616275 32.0 32.0 32.0 32.0 32.0 4 31.57419918983404 32.0 32.0 32.0 32.0 32.0 5 31.522314857241263 32.0 32.0 32.0 32.0 32.0 6 35.145126438586146 36.0 36.0 36.0 36.0 36.0 7 35.16212872718023 36.0 36.0 36.0 36.0 36.0 8 35.0900900407517 36.0 36.0 36.0 36.0 36.0 9 35.21679058907718 36.0 36.0 36.0 36.0 36.0 10 35.05761068586627 36.0 36.0 36.0 36.0 36.0 11 35.221616656535026 36.0 36.0 36.0 36.0 36.0 12 35.13167387442975 36.0 36.0 36.0 36.0 36.0 13 35.17141514950708 36.0 36.0 36.0 36.0 36.0 14 35.134122201553275 36.0 36.0 36.0 36.0 36.0 15 35.090513257233475 36.0 36.0 36.0 36.0 36.0 16 35.1128223336601 36.0 36.0 36.0 36.0 36.0 17 35.09578961972584 36.0 36.0 36.0 36.0 36.0 18 35.08946206173058 36.0 36.0 36.0 36.0 36.0 19 35.08531447935854 36.0 36.0 36.0 36.0 36.0 20 35.082288070771774 36.0 36.0 36.0 36.0 36.0 21 35.0701952150676 36.0 36.0 36.0 36.0 36.0 22 35.042303088719684 36.0 36.0 36.0 36.0 36.0 23 35.00928337979283 36.0 36.0 36.0 36.0 36.0 24 34.997683414599415 36.0 36.0 36.0 36.0 36.0 25 34.976023614932025 36.0 36.0 36.0 36.0 36.0 26 34.930430938433105 36.0 36.0 36.0 32.0 36.0 27 34.91134268851693 36.0 36.0 36.0 32.0 36.0 28 34.88444638355279 36.0 36.0 36.0 32.0 36.0 29 34.852807072309474 36.0 36.0 36.0 32.0 36.0 30 34.83067142032181 36.0 36.0 36.0 32.0 36.0 31 34.82771864105827 36.0 36.0 36.0 32.0 36.0 32 34.80007265571233 36.0 36.0 36.0 32.0 36.0 33 34.78949528620205 36.0 36.0 36.0 32.0 36.0 34 34.78101878643054 36.0 36.0 36.0 32.0 36.0 35 34.76815708238026 36.0 36.0 36.0 32.0 36.0 36 34.73001131214148 36.0 36.0 36.0 32.0 36.0 37 34.69644181731774 36.0 36.0 36.0 32.0 36.0 38 34.68290467071567 36.0 36.0 36.0 32.0 36.0 39 34.62942818007177 36.0 36.0 36.0 32.0 36.0 40 34.63970433871436 36.0 36.0 36.0 32.0 36.0 41 34.615272486304036 36.0 36.0 36.0 32.0 36.0 42 34.59431551199458 36.0 36.0 36.0 32.0 36.0 43 34.58758877353628 36.0 36.0 36.0 32.0 36.0 44 34.53760237366334 36.0 36.0 36.0 32.0 36.0 45 34.522863730377935 36.0 36.0 36.0 32.0 36.0 46 34.47298077666157 36.0 36.0 36.0 32.0 36.0 47 34.46092990792683 36.0 36.0 36.0 32.0 36.0 48 34.43750817681017 36.0 36.0 36.0 32.0 36.0 49 34.40751578923028 36.0 36.0 36.0 32.0 36.0 50 33.97278727149809 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 21.0 21 60.0 22 198.0 23 514.0 24 1386.0 25 3381.0 26 7353.0 27 14630.0 28 26767.0 29 43673.0 30 68591.0 31 106042.0 32 166025.0 33 290014.0 34 646792.0 35 1911280.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.04278634885785 18.075860576646534 12.5203033303092 26.36104974418641 2 15.643168626763693 19.555999381726615 38.406643761341606 26.39418823016809 3 18.894043287414323 23.060069753240988 28.272242706958806 29.773644252385882 4 12.598163586759254 16.061116007902072 35.72480636546991 35.61591403986877 5 14.5902633405269 36.642100225360565 33.45948697384302 15.308149460269513 6 34.911942926895165 35.3670758674574 16.320223249111883 13.40075795653555 7 30.902196527008268 29.873972155945687 19.943688780412412 19.280142536633633 8 27.567487968299233 34.65656180268923 18.521973484924548 19.253976744086987 9 26.98396036916891 14.575806864808651 18.445058224973483 39.995174541048954 10 15.985382449568478 27.11548911472605 31.532883403402888 25.36624503230258 11 36.992680271661776 21.07146486451292 22.57000414393133 19.365850719893974 12 24.9205442241447 23.13685865664821 29.113429927703304 22.829167191503785 13 29.74956293998845 19.975665812931624 24.87521046729063 25.399560779789297 14 22.82067852159621 20.04223645722471 25.1442617504185 31.992823270760578 15 24.698439240899933 28.513655196921928 21.752688230930765 25.035217331247374 16 25.00790302298616 26.203107842871777 24.61842622896952 24.170562905172545 17 23.774725913323074 26.656796686315353 25.420828092568488 24.14764930779309 18 24.18383140198051 25.686024007455437 26.737951318773163 23.39219327179089 19 25.537022466679687 25.095063975362773 25.21268834046199 24.155225217495545 20 25.9307060980155 25.001422388547873 25.202838692011042 23.865032821425583 21 25.832300393034547 24.610540433147314 24.648024452237387 24.909134721580756 22 25.64125968210388 25.474437541948937 24.947683627576797 23.93661914837039 23 24.130663568147195 25.435790151369247 25.52061607719038 24.912930203293183 24 24.819446612271697 25.056462391924306 25.771282510943344 24.352808484860656 25 24.668081852808672 25.172839014107947 25.717118752413114 24.441960380670267 26 23.86191939801346 25.975608494552926 25.967697867599227 24.194774239834388 27 24.57239349200192 25.731297872502264 25.259004023762255 24.437304611733566 28 24.09623927832407 25.568027096011388 25.38182112482402 24.953912500840513 29 24.277098224703725 25.461349144846274 25.227316360175607 25.034236270274395 30 24.27633792823531 25.44803488985562 25.671238445047685 24.604388736861385 31 25.101651494499077 24.978945574919674 25.117533589718626 24.801869340862623 32 24.5377504906899 25.65181660991773 25.152044650270682 24.65838824912169 33 24.095482310044897 25.483125446493226 25.771010891087904 24.650381352373973 34 24.497856824692885 25.600265554146517 25.808680529355783 24.093197091804818 35 24.755433137322854 25.538521733918433 25.655933300250794 24.050111828507916 36 23.97883973935164 25.684913897625204 25.837010497068967 24.499235865954187 37 24.78103977582173 25.424274417571585 24.932469642525717 24.86221616408097 38 24.53788472082012 25.682516443375096 25.176086656236862 24.603512179567925 39 25.183078159290552 25.165005380759066 25.048658065768485 24.603258394181903 40 25.481953187514645 25.1405196045918 25.394693205709018 23.982834002184543 41 24.854344650571683 25.177191569530137 25.842996783701082 24.125466996197094 42 25.015068897035846 25.806805938469 25.405932201069138 23.772192963426015 43 24.511864584182746 25.36125611120104 25.69509777313128 24.431781531484933 44 24.045676452377005 25.74908073553328 25.415787463925433 24.789455348164285 45 24.330064971694686 25.933637228288152 25.15865641188537 24.577641388131788 46 24.49705034988397 25.188451136274782 25.292964501054417 25.021534012786837 47 25.047943327837434 25.219696515616153 25.346480489659363 24.38587966688705 48 24.721520889964772 25.607877071820685 24.909039792466505 24.76156224574804 49 24.804099294897423 25.424372926057032 25.05323107611663 24.71829670292891 50 24.463577553289305 26.17712939675941 24.74939772086256 24.60989532908873 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 5.5 2 9.0 3 40.0 4 71.0 5 109.5 6 148.0 7 155.0 8 162.0 9 204.5 10 247.0 11 409.0 12 571.0 13 1085.5 14 1600.0 15 2277.5 16 2955.0 17 3290.0 18 3625.0 19 4210.5 20 4796.0 21 6277.5 22 7759.0 23 9819.0 24 11879.0 25 16273.0 26 20667.0 27 27632.0 28 34597.0 29 42342.5 30 50088.0 31 60229.5 32 70371.0 33 84461.5 34 98552.0 35 115395.0 36 132238.0 37 143308.5 38 154379.0 39 158652.5 40 162926.0 41 169086.5 42 175247.0 43 179047.5 44 182848.0 45 193550.0 46 204252.0 47 213665.0 48 223078.0 49 230485.0 50 237892.0 51 234041.5 52 230191.0 53 228196.0 54 226201.0 55 222917.5 56 219634.0 57 210865.0 58 202096.0 59 185230.0 60 168364.0 61 149157.5 62 129951.0 63 113841.5 64 97732.0 65 82747.5 66 67763.0 67 59922.0 68 52081.0 69 45867.5 70 39654.0 71 32627.5 72 25601.0 73 21776.5 74 17952.0 75 14157.5 76 10363.0 77 8759.5 78 7156.0 79 5991.0 80 4826.0 81 3843.5 82 2861.0 83 2224.5 84 1588.0 85 1299.0 86 1010.0 87 706.5 88 403.0 89 277.0 90 151.0 91 111.5 92 72.0 93 59.0 94 46.0 95 41.0 96 36.0 97 33.0 98 30.0 99 21.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02869109578079638 2 0.004928905107623556 3 1.521267008525789E-4 4 3.0425340170515777E-5 5 3.0425340170515777E-5 6 6.0850680341031553E-5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.172307828987682E-4 17 0.0 18 1.521267008525789E-4 19 0.0 20 2.7382806153464196E-4 21 0.0 22 0.0 23 9.127602051154733E-5 24 0.0010040362256270208 25 1.521267008525789E-4 26 4.8680544272825243E-4 27 2.7382806153464196E-4 28 0.0015516923486963046 29 4.5638010255773665E-4 30 0.0014604163281847573 31 4.259547623872209E-4 32 0.001064886905968052 33 3.042534017051578E-4 34 6.693574837513471E-4 35 1.521267008525789E-4 36 2.1297738119361044E-4 37 0.0019472217709130097 38 0.0 39 6.997828239218628E-4 40 1.2170136068206311E-4 41 0.0011257375863090837 42 0.004959330447794071 43 0.0044420996648953034 44 0.004229122283701693 45 0.0021906244922771357 46 0.0022210498324476517 47 0.0012474389469911468 48 0.004016144902508083 49 0.0036510408204618932 50 0.0015821176888668202 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3286734.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.05625369232733 #Duplication Level Percentage of deduplicated Percentage of total 1 65.35303087658558 28.792097078613548 2 16.412019208485894 14.461041637048078 3 6.976178939975329 9.220329275478727 4 3.6941332883572766 6.5099869330055835 5 2.1460819858188147 4.727416620588365 6 1.3034457409555888 3.44549617426338 7 0.8919716233476107 2.7507849687191563 8 0.6128397659243866 2.159953936024902 9 0.4299380921054878 1.7047315492015107 >10 2.009084037525617 15.210384260878376 >50 0.10460423594056889 3.1699015099407584 >100 0.05953031014468785 5.038736549932198 >500 0.0052004088603403815 1.5729201724555806 >1k 0.0019414859729925886 1.2362193338497378 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.0425340170515777E-5 0.0 5 0.0 0.0 0.0 3.0425340170515777E-5 3.0425340170515777E-5 6 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 7 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 8 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 9 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 10 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 11 0.0 0.0 0.0 3.0425340170515777E-5 6.0850680341031553E-5 12 0.0 0.0 0.0 3.0425340170515777E-5 1.2170136068206311E-4 13 0.0 0.0 0.0 9.127602051154733E-5 1.8255204102309467E-4 14 0.0 0.0 0.0 1.2170136068206311E-4 2.4340272136412621E-4 15 0.0 0.0 0.0 1.2170136068206311E-4 2.4340272136412621E-4 16 0.0 0.0 0.0 1.521267008525789E-4 2.4340272136412621E-4 17 0.0 0.0 0.0 1.521267008525789E-4 2.73828061534642E-4 18 0.0 0.0 0.0 1.521267008525789E-4 3.042534017051578E-4 19 0.0 0.0 0.0 1.521267008525789E-4 3.042534017051578E-4 20 0.0 0.0 0.0 1.8255204102309467E-4 3.6510408204618933E-4 21 0.0 0.0 0.0 1.8255204102309467E-4 3.955294222167051E-4 22 0.0 0.0 0.0 1.8255204102309467E-4 4.259547623872209E-4 23 0.0 0.0 0.0 1.8255204102309467E-4 5.172307828987682E-4 24 0.0 0.0 0.0 2.1297738119361044E-4 5.172307828987682E-4 25 0.0 0.0 0.0 2.1297738119361044E-4 5.780814632397997E-4 26 0.0 0.0 0.0 3.042534017051578E-4 6.085068034103156E-4 27 0.0 0.0 0.0 4.259547623872209E-4 6.085068034103156E-4 28 0.0 0.0 0.0 5.780814632397997E-4 6.389321435808313E-4 29 0.0 0.0 0.0 6.693574837513471E-4 6.389321435808313E-4 30 0.0 0.0 0.0 0.001095312246138568 6.389321435808313E-4 31 0.0 0.0 0.0 0.0021297738119361045 7.910588444334102E-4 32 0.0 0.0 0.0 0.0032859367384157037 8.519095247744418E-4 33 0.0 0.0 0.0 0.004776778406770977 8.519095247744418E-4 34 0.0 0.0 0.0 0.006176344054614703 9.127602051154733E-4 35 0.0 0.0 0.0 0.007880163104163587 9.127602051154733E-4 36 0.0 0.0 0.0 0.010101212936611238 9.127602051154733E-4 37 0.0 0.0 0.0 0.013721828416902615 9.127602051154733E-4 38 0.0 0.0 0.0 0.019837321791176286 9.127602051154733E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3530 0.0 27.746546 1 GGTATCA 1500 0.0 25.53181 1 TCCGTTA 100 4.6306013E-8 21.999802 26 GTAGGAC 2810 0.0 20.90341 3 TAGGACG 2820 0.0 20.829283 4 GTCCTAC 2490 0.0 19.446749 1 AGGACGT 2980 0.0 19.194166 5 TGTAGGA 3050 0.0 19.187588 2 GTCCTAA 1625 0.0 18.827171 1 GGACGTG 3010 0.0 18.71051 6 TCAACGC 5180 0.0 18.644337 4 CTGTAGG 3115 0.0 18.44192 1 TATCAAC 5390 0.0 18.327202 2 ATCAACG 5310 0.0 18.312174 3 ATACCGT 640 0.0 18.21831 6 CAACGCA 5295 0.0 18.114763 5 TTAGGAC 1850 0.0 18.075237 3 TAGGACC 1620 0.0 17.925493 4 AACGCAG 5415 0.0 17.835209 6 TACCGTC 560 0.0 17.677876 7 >>END_MODULE