##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061995_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 187907 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.00927586518863 32.0 32.0 32.0 32.0 32.0 2 31.41568967627603 32.0 32.0 32.0 32.0 32.0 3 31.568887800880223 32.0 32.0 32.0 32.0 32.0 4 31.64903383056512 32.0 32.0 32.0 32.0 32.0 5 31.669985684407713 32.0 32.0 32.0 32.0 32.0 6 35.22861309051818 36.0 36.0 36.0 36.0 36.0 7 35.255126206048736 36.0 36.0 36.0 36.0 36.0 8 35.191557525797336 36.0 36.0 36.0 36.0 36.0 9 35.299068156055924 36.0 36.0 36.0 36.0 36.0 10 35.18524057113359 36.0 36.0 36.0 36.0 36.0 11 35.288743899907935 36.0 36.0 36.0 36.0 36.0 12 35.23942695056597 36.0 36.0 36.0 36.0 36.0 13 35.2657697690879 36.0 36.0 36.0 36.0 36.0 14 35.200955791960915 36.0 36.0 36.0 36.0 36.0 15 35.19553821837398 36.0 36.0 36.0 36.0 36.0 16 35.22137546765155 36.0 36.0 36.0 36.0 36.0 17 35.2172564087554 36.0 36.0 36.0 36.0 36.0 18 35.20940678101401 36.0 36.0 36.0 36.0 36.0 19 35.18129180924606 36.0 36.0 36.0 36.0 36.0 20 35.13547659214399 36.0 36.0 36.0 36.0 36.0 21 35.10378006141336 36.0 36.0 36.0 36.0 36.0 22 35.096840458311824 36.0 36.0 36.0 36.0 36.0 23 35.06396781386537 36.0 36.0 36.0 36.0 36.0 24 35.063845412890416 36.0 36.0 36.0 36.0 36.0 25 35.05727833449526 36.0 36.0 36.0 36.0 36.0 26 35.02430457619993 36.0 36.0 36.0 36.0 36.0 27 34.98631237793164 36.0 36.0 36.0 36.0 36.0 28 34.98084690831103 36.0 36.0 36.0 36.0 36.0 29 34.91386696610557 36.0 36.0 36.0 32.0 36.0 30 34.89904048279202 36.0 36.0 36.0 36.0 36.0 31 34.8827824402497 36.0 36.0 36.0 32.0 36.0 32 34.81512663179126 36.0 36.0 36.0 32.0 36.0 33 34.75562911440234 36.0 36.0 36.0 32.0 36.0 34 34.73099458774819 36.0 36.0 36.0 32.0 36.0 35 34.68428531135083 36.0 36.0 36.0 32.0 36.0 36 34.655223062472395 36.0 36.0 36.0 32.0 36.0 37 34.62517628401284 36.0 36.0 36.0 32.0 36.0 38 34.62358507133848 36.0 36.0 36.0 32.0 36.0 39 34.55095339715923 36.0 36.0 36.0 32.0 36.0 40 34.560878519693254 36.0 36.0 36.0 32.0 36.0 41 34.52635612297573 36.0 36.0 36.0 32.0 36.0 42 34.51379671858952 36.0 36.0 36.0 32.0 36.0 43 34.478688925904834 36.0 36.0 36.0 32.0 36.0 44 34.4125285380534 36.0 36.0 36.0 32.0 36.0 45 34.34624574922701 36.0 36.0 36.0 32.0 36.0 46 34.226649353137454 36.0 36.0 36.0 32.0 36.0 47 34.12984082551475 36.0 36.0 36.0 32.0 36.0 48 34.09394540916517 36.0 36.0 36.0 32.0 36.0 49 33.99531151048125 36.0 36.0 36.0 32.0 36.0 50 33.64013049008286 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 6.0 21 6.0 22 21.0 23 65.0 24 154.0 25 313.0 26 665.0 27 1251.0 28 2050.0 29 3050.0 30 4238.0 31 6016.0 32 8746.0 33 14147.0 34 30064.0 35 117112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.15909163499313 21.091379475550163 13.301287169823372 24.44824171963333 2 14.450854746343644 21.67947544333979 40.93787920720413 22.931790603112425 3 17.65670069077092 26.974125360552613 30.21404319180867 25.155130756867795 4 10.627597694604246 18.31650763409559 39.244945638001774 31.810949033298385 5 11.547733719339886 40.298126200726955 34.2802556583842 13.873884421548958 6 28.576902403848713 40.220428190541064 18.352695748428744 12.84997365718148 7 27.257632765144457 33.58150574486315 20.824131086122392 18.33673040387 8 25.947410155023498 35.59739658448062 19.336693151399363 19.11850010909652 9 26.835615490641647 14.951545179264212 20.898103849244574 37.31473548084957 10 15.55290649097692 27.557781242848854 32.70766921934787 24.181643046826355 11 33.26645627890393 23.412113439094874 24.632930119686865 18.688500162314337 12 23.328561469237442 27.05274417664057 30.019637373807257 19.59905698031473 13 28.053239102321893 22.016742324660605 26.885108058773753 23.04491051424375 14 21.43986120793797 23.23383375818889 27.732867854843086 27.59343717903005 15 24.032633164278074 29.832310664317983 24.47008360518767 21.664972566216267 16 22.274967270869478 27.965578533947827 27.14814854235628 22.611305652826413 17 19.91942822779354 28.621605368613196 27.702001522029512 23.756964881563754 18 20.002554468723723 27.464264046917076 31.226251423584134 21.306930060775066 19 23.641482222588834 26.119303698105977 28.59127121395158 21.647942865353606 20 23.474378282873975 26.601457103780064 29.227224105541573 20.696940507804392 21 24.35619748066863 25.03206373365548 27.479018876359053 23.132719909316844 22 23.094935260527812 27.37843720563896 28.2363083865955 21.290319147237728 23 22.348940427660636 26.934211786744438 28.89157344629762 21.82527433929731 24 22.49328117931934 27.48197227322317 28.7714536600942 21.253292887363294 25 22.142986386810428 26.863963896842037 29.785637499600863 21.207412216746672 26 20.14954365237753 27.58574811739975 30.82568319097416 21.43902503924856 27 21.22679666212534 28.07018477520436 28.82056794959128 21.88245061307902 28 20.686315206863153 27.43238496663154 29.298783408372447 22.582516418132855 29 21.581118118198024 26.873153987387244 28.35794683483675 23.18778105957798 30 21.24831028940618 27.063043501399665 29.52815829528158 22.160487913912572 31 22.43580532716 26.159495489742156 29.015193847955086 22.389505335142758 32 20.84320101328877 27.91653140184031 29.267760493446087 21.97250709142483 33 21.405383542835246 27.4951305439954 29.27101848796739 21.828467425201964 34 21.143018317669473 27.60103455983311 30.148052749779147 21.107894372718274 35 21.881569074063233 27.87016981804829 28.613090518181867 21.63517058970661 36 20.384019754453 27.83717477262688 29.345367655276277 22.433437817643835 37 22.283187159400544 27.03454955722071 27.41240207765668 23.26986120572207 38 21.760764633568733 28.257595512673824 28.44758311292288 21.53405674083456 39 21.947260583805647 27.46600675873447 27.750725100449696 22.83600755701019 40 22.50687840261406 27.542880254594028 29.23733549042878 20.712905852363136 41 22.555546685825284 27.238764269178574 29.14185359623214 21.063835448764003 42 21.797232570516233 29.001064395955297 27.827035657264503 21.37466737626397 43 20.782220424585287 28.535239301547094 28.873715413967993 21.808824859899627 44 20.807544318079007 28.462557809082345 28.411999808411785 22.31789806442686 45 21.285677032054114 28.394207588038384 28.48468076274208 21.835434617165422 46 22.562293110238315 27.378633543017106 27.232812849251204 22.826260497493376 47 22.809398366195683 27.872063010563846 27.11529762379926 22.203240999441206 48 21.70356572645024 28.690792974986696 26.72112825971261 22.88451303885045 49 22.134410490574872 28.040680780406806 27.511149428957648 22.31375930006067 50 20.961656156036295 29.234985764082914 27.049839014395573 22.75351906548522 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 575.0 1 303.5 2 32.0 3 96.0 4 160.0 5 143.0 6 126.0 7 93.5 8 61.0 9 94.0 10 127.0 11 233.0 12 339.0 13 578.0 14 817.0 15 1090.5 16 1364.0 17 1466.5 18 1569.0 19 1552.5 20 1536.0 21 1641.5 22 1747.0 23 1636.5 24 1526.0 25 2051.0 26 2576.0 27 3611.5 28 4647.0 29 5341.0 30 6035.0 31 6305.5 32 6576.0 33 7770.5 34 8965.0 35 9971.0 36 10977.0 37 12333.5 38 13690.0 39 13256.0 40 12822.0 41 12764.5 42 12707.0 43 11603.0 44 10499.0 45 10372.5 46 10246.0 47 10267.5 48 10289.0 49 10015.0 50 9741.0 51 9642.0 52 9543.0 53 9106.5 54 8670.0 55 8559.0 56 8448.0 57 8149.5 58 7851.0 59 7241.5 60 6632.0 61 5876.5 62 5121.0 63 4420.0 64 3719.0 65 3221.0 66 2723.0 67 2330.5 68 1938.0 69 1684.0 70 1430.0 71 1125.0 72 820.0 73 656.0 74 492.0 75 402.5 76 313.0 77 256.5 78 200.0 79 159.0 80 118.0 81 83.5 82 49.0 83 43.0 84 37.0 85 32.0 86 27.0 87 21.5 88 16.0 89 10.0 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.028205442053781924 2 0.007982672279372242 3 5.321781519581495E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 5.321781519581495E-4 17 0.0 18 5.321781519581495E-4 19 0.0 20 0.0 21 0.0 22 0.0 23 5.321781519581495E-4 24 0.001064356303916299 25 5.321781519581495E-4 26 0.001064356303916299 27 0.0015965344558744486 28 0.0026608907597907476 29 0.001064356303916299 30 0.0026608907597907476 31 0.001064356303916299 32 0.002128712607832598 33 5.321781519581495E-4 34 5.321781519581495E-4 35 0.0 36 0.0 37 0.0015965344558744486 38 0.0 39 0.001064356303916299 40 0.0 41 0.001064356303916299 42 0.0037252470637070467 43 0.003193068911748897 44 0.002128712607832598 45 0.003193068911748897 46 0.0026608907597907476 47 0.001064356303916299 48 0.0037252470637070467 49 0.0026608907597907476 50 0.001064356303916299 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 187907.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.7103407536707 #Duplication Level Percentage of deduplicated Percentage of total 1 68.69274939616278 32.08661731601271 2 15.59722918470583 14.571037800614134 3 6.066855033495876 8.501545977531439 4 3.041972382992298 5.6836626629130365 5 1.7351775053547829 4.052536627161309 6 1.0743745157909128 3.0110639837792097 7 0.7337191815157453 2.399059109027338 8 0.48193045618192587 1.8008908662263778 9 0.3828100077473454 1.609306731521444 >10 1.9983593856810828 16.923265232269156 >50 0.1344392289112701 4.35694253008137 >100 0.058105090461650646 4.437833609179009 >500 0.0022786309984961033 0.5662375536834711 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 552 0.2937623398808985 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 512 0.27247521380257256 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 300 0.15965344558744485 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 282 0.15007423885219814 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 278 0.14794552624436558 No Hit GTTATATAATTTAAGCTCCATAGGGTCTTCTCGTCTTATTATTATATTTC 260 0.13836631950911887 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 257 0.1367697850532444 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 256 0.13623760690128628 No Hit GACTATAGGCAATAATCACACTATAAATAATCCACCTATAACTTCTCTGT 228 0.1213366186464581 No Hit ACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATC 225 0.11974008419058364 No Hit ATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTA 220 0.1170791934307929 No Hit CCTATAACTTCTCTGTTAACCCAACACCGGAATGCCTAAAGGAAAGATCC 216 0.1149504808229603 No Hit CCATTGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGA 215 0.11441830267100214 No Hit GTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGGGCAGGCAGTGCCTC 210 0.11175741191121139 No Hit CACTATAAATAATCCACCTATAACTTCTCTGTTAACCCAACACCGGAATG 208 0.1106930556072951 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 5.321781519581495E-4 0.0 3 0.0 0.0 0.0 5.321781519581495E-4 0.0 4 0.0 0.0 0.0 5.321781519581495E-4 0.0 5 0.0 0.0 0.0 5.321781519581495E-4 0.0 6 0.0 0.0 0.0 5.321781519581495E-4 0.0 7 0.0 0.0 0.0 5.321781519581495E-4 0.0 8 0.0 0.0 0.0 5.321781519581495E-4 0.0 9 0.0 0.0 0.0 5.321781519581495E-4 0.0 10 0.0 0.0 0.0 5.321781519581495E-4 0.0 11 0.0 0.0 0.0 5.321781519581495E-4 0.0 12 0.0 0.0 0.0 5.321781519581495E-4 0.0 13 0.0 0.0 0.0 5.321781519581495E-4 0.0 14 0.0 0.0 0.0 5.321781519581495E-4 0.0 15 0.0 0.0 0.0 0.001064356303916299 0.0 16 0.0 0.0 0.0 0.001064356303916299 0.0 17 0.0 0.0 0.0 0.001064356303916299 0.0 18 0.0 0.0 0.0 0.0015965344558744486 0.0 19 0.0 0.0 0.0 0.0015965344558744486 0.0 20 0.0 0.0 0.0 0.0015965344558744486 0.0 21 0.0 0.0 0.0 0.0015965344558744486 0.0 22 0.0 0.0 0.0 0.0037252470637070467 0.0 23 0.0 0.0 0.0 0.004789603367623346 0.0 24 0.0 0.0 0.0 0.006918315975455944 0.0 25 0.0 0.0 0.0 0.007450494127414093 0.0 26 0.0 0.0 0.0 0.009047028583288541 0.0 27 0.0 0.0 0.0 0.01064356303916299 0.0 28 0.0 0.0 0.0 0.015965344558744484 0.0 29 0.0 0.0 0.0 0.020754947926367832 0.0 30 0.0 0.0 0.0 0.027141085749865627 0.0 31 0.0 0.0 0.0 0.041509895852735665 0.0 32 0.0 0.0 0.0 0.0558787059556057 0.0 33 0.0 0.0 0.0 0.06492573453889423 0.0 34 0.0 0.0 0.0 0.07663365388197353 0.0 35 0.0 0.0 0.0 0.09100246398484356 0.0 36 0.0 0.0 0.0 0.1074999866955462 0.0 37 0.0 0.0 0.0 0.13464107244541182 0.0 38 0.0 0.0 0.0 0.15965344558744485 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCATAA 25 0.0023479648 35.19936 33 GTGTAAC 70 2.7284841E-11 34.5708 38 AGTGTAA 70 2.7284841E-11 34.5708 37 CTATGTA 45 4.051995E-5 29.332802 4 TCGTTCA 30 0.005733341 29.3328 33 TGTAGTA 30 0.005733341 29.3328 7 TTCGCTT 30 0.005733341 29.3328 36 TATGTAG 30 0.005733341 29.3328 5 ATTGAAC 30 0.005733341 29.3328 8 AGCTTAC 40 7.0106465E-4 27.4995 15 TATATGG 40 7.0106465E-4 27.4995 3 GTGAGGA 40 7.0106465E-4 27.4995 9 GTTATAT 75 6.947812E-8 26.399523 1 AGGACCT 145 0.0 24.275421 5 GGACCTG 140 0.0 23.571001 6 CTGTAGG 255 0.0 23.293694 1 TGTAGGA 230 0.0 22.956106 2 TAGGACC 175 0.0 22.62816 4 CGTGATT 70 3.197206E-5 21.999601 28 GACGTGA 90 4.0447048E-7 21.999601 7 >>END_MODULE