##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061991_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 808553 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.227241751622962 32.0 32.0 32.0 32.0 32.0 2 31.37830296838921 32.0 32.0 32.0 32.0 32.0 3 31.547532443760645 32.0 32.0 32.0 32.0 32.0 4 31.629071934678368 32.0 32.0 32.0 32.0 32.0 5 31.59525225928294 32.0 32.0 32.0 32.0 32.0 6 35.22833011565105 36.0 36.0 36.0 36.0 36.0 7 35.23138866592542 36.0 36.0 36.0 36.0 36.0 8 35.17665879664042 36.0 36.0 36.0 36.0 36.0 9 35.2796885300036 36.0 36.0 36.0 36.0 36.0 10 35.15389714712579 36.0 36.0 36.0 36.0 36.0 11 35.27605487828256 36.0 36.0 36.0 36.0 36.0 12 35.201035677314906 36.0 36.0 36.0 36.0 36.0 13 35.237733333498234 36.0 36.0 36.0 36.0 36.0 14 35.19335281669847 36.0 36.0 36.0 36.0 36.0 15 35.17103517023621 36.0 36.0 36.0 36.0 36.0 16 35.18563656309481 36.0 36.0 36.0 36.0 36.0 17 35.163020853302136 36.0 36.0 36.0 36.0 36.0 18 35.15516237030844 36.0 36.0 36.0 36.0 36.0 19 35.14887954160086 36.0 36.0 36.0 36.0 36.0 20 35.15258368962826 36.0 36.0 36.0 36.0 36.0 21 35.1464937981802 36.0 36.0 36.0 36.0 36.0 22 35.12554526419419 36.0 36.0 36.0 36.0 36.0 23 35.09452936294838 36.0 36.0 36.0 36.0 36.0 24 35.07936152608425 36.0 36.0 36.0 36.0 36.0 25 35.06173250238389 36.0 36.0 36.0 36.0 36.0 26 35.02340724726765 36.0 36.0 36.0 36.0 36.0 27 35.00923501613376 36.0 36.0 36.0 36.0 36.0 28 34.99179769291562 36.0 36.0 36.0 36.0 36.0 29 34.960603695737944 36.0 36.0 36.0 36.0 36.0 30 34.95020610893782 36.0 36.0 36.0 36.0 36.0 31 34.9467369485983 36.0 36.0 36.0 36.0 36.0 32 34.916463113735276 36.0 36.0 36.0 32.0 36.0 33 34.89836906176837 36.0 36.0 36.0 32.0 36.0 34 34.88802589316965 36.0 36.0 36.0 32.0 36.0 35 34.8835895729779 36.0 36.0 36.0 32.0 36.0 36 34.85652270166582 36.0 36.0 36.0 32.0 36.0 37 34.84589260073242 36.0 36.0 36.0 32.0 36.0 38 34.829548588651576 36.0 36.0 36.0 32.0 36.0 39 34.81264431645174 36.0 36.0 36.0 32.0 36.0 40 34.800929561822166 36.0 36.0 36.0 32.0 36.0 41 34.77583411353368 36.0 36.0 36.0 32.0 36.0 42 34.74613909044923 36.0 36.0 36.0 32.0 36.0 43 34.7396027223942 36.0 36.0 36.0 32.0 36.0 44 34.70534646461024 36.0 36.0 36.0 32.0 36.0 45 34.67900805513059 36.0 36.0 36.0 32.0 36.0 46 34.67029495901939 36.0 36.0 36.0 32.0 36.0 47 34.64623221978027 36.0 36.0 36.0 32.0 36.0 48 34.61787044263023 36.0 36.0 36.0 32.0 36.0 49 34.60621505331129 36.0 36.0 36.0 32.0 36.0 50 34.18831913306858 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 7.0 21 20.0 22 43.0 23 149.0 24 381.0 25 951.0 26 1929.0 27 3634.0 28 6389.0 29 9828.0 30 15182.0 31 23095.0 32 35207.0 33 60493.0 34 138485.0 35 512759.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.848178065023774 18.350119821004615 12.358327281455024 25.443374832516586 2 16.372692225395387 19.05698952526663 37.77100543340461 26.79931281593337 3 19.45650654816603 22.023333213777306 28.023479154582233 30.49668108347443 4 13.253305596540981 15.607511195926548 33.891037445906456 37.24814576162602 5 15.141617185268002 36.317965550804956 32.635708481695076 15.904708782231964 6 36.31512096300428 33.59000584995665 15.869213273588745 14.225659913450325 7 32.00495205632778 29.402154218709224 18.791470688996267 19.80142303596672 8 28.61346133153918 33.965986150567744 17.803161944857045 19.61739057303603 9 26.393322391976774 15.237467426377737 18.663340560235383 39.7058696214101 10 18.090712668186253 26.37724428701644 29.387312891053526 26.14473015374379 11 37.459511002989295 21.500260341622628 20.691407984386924 20.348820671001157 12 24.363152446407348 23.520659746485386 27.824026377986357 24.292161429120913 13 30.02474791386588 18.846754634513754 24.749645354107894 26.378852097512468 14 23.551702856831895 19.201586043215475 24.52356246281938 32.72314863713325 15 25.60265066111931 26.72626284238634 21.51720419069622 26.153882305798138 16 26.284368665349906 25.80672290733153 22.782787437743416 25.126120989575153 17 24.628441178253002 26.120365640842348 24.382940883281616 24.868252297623037 18 25.130109133364336 25.073340984871724 25.264918026298865 24.53163185546508 19 25.947340495922965 24.969544358873197 24.617186504780765 24.465928640423076 20 26.08184270379976 24.28950060045687 24.641735648091462 24.98692104765191 21 26.65378769233433 24.108252643920682 24.433401397311 24.804558266433986 22 26.189996203093674 23.910491952908465 24.841785263303702 25.057726580694155 23 24.96224737277581 24.13150405724795 25.31707878147753 25.58916978849871 24 24.97823258483108 24.572690798814666 25.089790587571798 25.359286028782456 25 25.29308675169965 24.260867306743314 24.909560212182562 25.53648572937447 26 24.985777043405992 25.055036658124646 25.15806033501865 24.801125963450712 27 25.429319507709508 24.52980469904656 24.81302880352039 25.227846989723542 28 25.164338410354404 24.5162606904996 25.062426952117693 25.256973947028307 29 24.896202951212604 24.844134369098224 25.269835223344533 24.98982745634464 30 24.995825824971586 24.81661457708495 25.147951314896055 25.03960828304741 31 25.408510069903084 24.539668640575453 24.66668645522591 25.385134834295553 32 25.330378223545313 24.524731523246135 24.631219366193264 25.513670887015284 33 24.881733170243635 24.42758854397918 24.937264471222047 25.753413814555138 34 25.64699392861516 24.416144021312306 25.099592231496747 24.83726981857579 35 25.69244411903298 24.466791746696863 25.187712804047745 24.65305133022241 36 24.816833054645837 24.935192789084685 24.861480770562686 25.386493385706792 37 25.78908051094818 24.534467234606748 24.73804505921814 24.938407195226926 38 25.104476762809615 24.43315404185007 25.11536040309046 25.34700879224986 39 25.591278160151877 24.430674854213432 24.631529475786753 25.34651750984794 40 25.762011301698966 24.577052035060248 24.76071391909725 24.900222744143534 41 24.859098751460955 24.98586967948599 25.217891397510346 24.93714017154271 42 25.826520389358205 24.75714586090463 24.80847484879593 24.60785890094124 43 25.582793251867606 24.258769108989263 24.81175481126008 25.346682827883043 44 25.007946667656135 24.735348138253464 24.862742187838197 25.3939630062522 45 25.10379884606109 24.843451427581982 24.878947726443506 25.173801999913426 46 25.24504317088646 24.662876253353303 24.659536863768984 25.43254371199125 47 25.20626659625177 24.737892079684272 25.14046906712214 24.915372256941826 48 25.875522716281786 25.041402963697735 24.258982804319512 24.824091515700967 49 25.27754140858449 25.01484178655532 24.355124374171332 25.352492430688855 50 25.218727042008947 25.212419391942532 24.550363493795004 25.018490072253513 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 8.0 1 11.5 2 15.0 3 45.5 4 76.0 5 80.0 6 84.0 7 66.5 8 49.0 9 68.0 10 87.0 11 185.0 12 283.0 13 563.5 14 844.0 15 995.5 16 1147.0 17 1277.5 18 1408.0 19 1295.0 20 1182.0 21 1441.5 22 1701.0 23 2066.0 24 2431.0 25 3267.5 26 4104.0 27 5004.5 28 5905.0 29 7009.5 30 8114.0 31 9524.0 32 10934.0 33 12512.5 34 14091.0 35 16535.5 36 18980.0 37 22485.0 38 25990.0 39 29101.0 40 32212.0 41 35982.0 42 39752.0 43 42268.5 44 44785.0 45 48466.5 46 52148.0 47 55991.5 48 59835.0 49 62750.5 50 65666.0 51 64853.5 52 64041.0 53 64041.0 54 64041.0 55 63598.0 56 63155.0 57 60531.5 58 57908.0 59 53354.0 60 48800.0 61 42836.5 62 36873.0 63 31720.5 64 26568.0 65 22439.5 66 18311.0 67 15520.5 68 12730.0 69 11131.5 70 9533.0 71 7430.5 72 5328.0 73 4652.0 74 3976.0 75 2938.0 76 1900.0 77 1629.5 78 1359.0 79 1147.0 80 935.0 81 756.5 82 578.0 83 463.5 84 349.0 85 271.5 86 194.0 87 134.5 88 75.0 89 51.0 90 27.0 91 18.5 92 10.0 93 10.5 94 11.0 95 10.5 96 10.0 97 6.5 98 3.0 99 5.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032650920842542175 2 0.004452398296710296 3 7.420663827850493E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 4.947109218566995E-4 17 0.0 18 1.2367773046417487E-4 19 0.0 20 2.4735546092834973E-4 21 0.0 22 0.0 23 0.0 24 6.183886523208744E-4 25 4.947109218566995E-4 26 1.2367773046417487E-4 27 7.420663827850493E-4 28 9.89421843713399E-4 29 4.947109218566995E-4 30 0.0012367773046417488 31 6.183886523208744E-4 32 0.0012367773046417488 33 0.0 34 7.420663827850493E-4 35 4.947109218566995E-4 36 1.2367773046417487E-4 37 0.002102521417890973 38 0.0 39 9.89421843713399E-4 40 2.4735546092834973E-4 41 9.89421843713399E-4 42 0.00531814240995952 43 0.004081365105317772 44 0.0046997537576386455 45 0.002226199148355148 46 0.0027209100702118476 47 0.0014841327655700986 48 0.004452398296710296 49 0.0030919432616043725 50 0.0013604550351059238 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 808553.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 65.83588821319111 #Duplication Level Percentage of deduplicated Percentage of total 1 81.85367590753103 53.88909456886986 2 11.625901410525204 15.308030912818364 3 2.9385588888369782 5.803879035400511 4 1.2529295777970024 3.299509264913767 5 0.6226387792919285 2.049598853533058 6 0.3805833846719433 1.503362710143598 7 0.25453236612776614 1.173015508211865 8 0.1828636878678892 0.9631194650177779 9 0.13278406269626392 0.7867761037348131 >10 0.674209376020264 7.902114929173642 >50 0.04415288319670014 2.0622241680479254 >100 0.03528288989049102 4.471731077424444 >500 0.0018867855464789955 0.7875434027104219 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.236777304641749E-4 2 0.0 0.0 0.0 0.0 1.236777304641749E-4 3 0.0 0.0 0.0 0.0 1.236777304641749E-4 4 0.0 0.0 0.0 0.0 1.236777304641749E-4 5 0.0 0.0 0.0 0.0 1.236777304641749E-4 6 0.0 0.0 0.0 0.0 1.236777304641749E-4 7 0.0 0.0 0.0 0.0 1.236777304641749E-4 8 0.0 0.0 0.0 0.0 1.236777304641749E-4 9 0.0 0.0 0.0 0.0 1.236777304641749E-4 10 0.0 0.0 0.0 0.0 2.473554609283498E-4 11 0.0 0.0 0.0 0.0 2.473554609283498E-4 12 0.0 0.0 0.0 0.0 4.947109218566996E-4 13 0.0 0.0 0.0 0.0 7.420663827850493E-4 14 0.0 0.0 0.0 0.0 7.420663827850493E-4 15 0.0 0.0 0.0 0.0 9.894218437133992E-4 16 0.0 0.0 0.0 1.236777304641749E-4 0.001236777304641749 17 0.0 0.0 0.0 2.473554609283498E-4 0.001236777304641749 18 0.0 0.0 0.0 4.947109218566996E-4 0.001236777304641749 19 0.0 0.0 0.0 4.947109218566996E-4 0.001236777304641749 20 0.0 1.236777304641749E-4 0.0 7.420663827850493E-4 0.001236777304641749 21 0.0 1.236777304641749E-4 0.0 0.001113099574177574 0.001236777304641749 22 0.0 1.236777304641749E-4 0.0 0.001236777304641749 0.0013604550351059238 23 0.0 1.236777304641749E-4 0.0 0.0019788436874267983 0.0014841327655700986 24 0.0 1.236777304641749E-4 0.0 0.0023498768788193227 0.0014841327655700986 25 0.0 1.236777304641749E-4 0.0 0.003462976452996897 0.0014841327655700986 26 0.0 1.236777304641749E-4 0.0 0.004081365105317771 0.0016078104960342737 27 0.0 1.236777304641749E-4 0.0 0.004823431488102821 0.0016078104960342737 28 0.0 1.236777304641749E-4 0.0 0.005441820140423695 0.0016078104960342737 29 0.0 1.236777304641749E-4 0.0 0.006183886523208744 0.0016078104960342737 30 0.0 1.236777304641749E-4 0.0 0.007668019288778844 0.0016078104960342737 31 0.0 1.236777304641749E-4 0.0 0.009399507515277291 0.0016078104960342737 32 0.0 1.236777304641749E-4 0.0 0.011502028933168264 0.0017314882264984485 33 0.0 1.236777304641749E-4 0.0 0.012738806237810013 0.0018551659569626233 34 0.0 1.236777304641749E-4 0.0 0.015088683116629337 0.0019788436874267983 35 0.0 1.236777304641749E-4 0.0 0.017191204534520308 0.0019788436874267983 36 0.0 1.236777304641749E-4 0.0 0.020901536448445557 0.0019788436874267983 37 0.0 1.236777304641749E-4 0.0 0.024488190631906628 0.0019788436874267983 38 0.0 1.236777304641749E-4 0.0 0.030548399424651197 0.0019788436874267983 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTACG 40 1.8145243E-5 33.01276 1 GGTATCA 535 0.0 29.618923 1 TATCGAG 30 0.005745205 29.331974 10 CGTCGTA 165 0.0 22.665615 10 GTATAGG 80 3.6009933E-6 22.008507 1 ATACCGT 200 0.0 21.99898 6 ACCGTCG 185 0.0 21.404413 8 GTAGGAC 95 6.8595E-7 20.842428 3 CCGTCGT 180 0.0 20.776814 9 GTATCAA 970 0.0 20.420263 1 GTACTAA 65 4.9173826E-4 20.315546 1 CACGACA 90 1.0016884E-5 19.554647 4 GAGTAAT 70 8.099067E-4 18.864433 1 GCATGCG 70 8.1226806E-4 18.856268 13 GGTAGTA 60 0.0074067293 18.334751 2 AACGCTT 180 1.4551915E-11 18.332483 30 GTAAACG 180 1.4551915E-11 18.332483 27 TAATACC 85 1.4305991E-4 18.116806 4 TACCGTC 225 0.0 17.599184 7 GTCGTAG 215 0.0 17.394543 11 >>END_MODULE