##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061988_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3613079 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.286229833336055 32.0 32.0 32.0 32.0 32.0 2 31.446194506126215 32.0 32.0 32.0 32.0 32.0 3 31.56880793362116 32.0 32.0 32.0 32.0 32.0 4 31.653228174639967 32.0 32.0 32.0 32.0 32.0 5 31.628614818552265 32.0 32.0 32.0 32.0 32.0 6 35.27108762360303 36.0 36.0 36.0 36.0 36.0 7 35.280029027873454 36.0 36.0 36.0 36.0 36.0 8 35.233208573629305 36.0 36.0 36.0 36.0 36.0 9 35.31437175882398 36.0 36.0 36.0 36.0 36.0 10 35.196368803449914 36.0 36.0 36.0 36.0 36.0 11 35.32005416986454 36.0 36.0 36.0 36.0 36.0 12 35.24956166195093 36.0 36.0 36.0 36.0 36.0 13 35.275660454698055 36.0 36.0 36.0 36.0 36.0 14 35.24552300129612 36.0 36.0 36.0 36.0 36.0 15 35.22005248155382 36.0 36.0 36.0 36.0 36.0 16 35.23523703744092 36.0 36.0 36.0 36.0 36.0 17 35.21864260371832 36.0 36.0 36.0 36.0 36.0 18 35.21468503733242 36.0 36.0 36.0 36.0 36.0 19 35.20290616396708 36.0 36.0 36.0 36.0 36.0 20 35.202843613438844 36.0 36.0 36.0 36.0 36.0 21 35.19485458247661 36.0 36.0 36.0 36.0 36.0 22 35.17511906050213 36.0 36.0 36.0 36.0 36.0 23 35.15006286881632 36.0 36.0 36.0 36.0 36.0 24 35.13659347055517 36.0 36.0 36.0 36.0 36.0 25 35.12289628873324 36.0 36.0 36.0 36.0 36.0 26 35.08187310601291 36.0 36.0 36.0 36.0 36.0 27 35.06563930653052 36.0 36.0 36.0 36.0 36.0 28 35.044510513055485 36.0 36.0 36.0 36.0 36.0 29 35.02967690437989 36.0 36.0 36.0 36.0 36.0 30 35.00723676398994 36.0 36.0 36.0 36.0 36.0 31 35.007932569423474 36.0 36.0 36.0 36.0 36.0 32 34.984355171863115 36.0 36.0 36.0 36.0 36.0 33 34.965224397252314 36.0 36.0 36.0 36.0 36.0 34 34.95714237081448 36.0 36.0 36.0 36.0 36.0 35 34.94344408190355 36.0 36.0 36.0 36.0 36.0 36 34.91823760288663 36.0 36.0 36.0 36.0 36.0 37 34.90028836900605 36.0 36.0 36.0 36.0 36.0 38 34.89019503863602 36.0 36.0 36.0 36.0 36.0 39 34.862092691579676 36.0 36.0 36.0 32.0 36.0 40 34.85658132578889 36.0 36.0 36.0 32.0 36.0 41 34.82902422006272 36.0 36.0 36.0 32.0 36.0 42 34.811833065371665 36.0 36.0 36.0 32.0 36.0 43 34.80374328931086 36.0 36.0 36.0 32.0 36.0 44 34.76834052064735 36.0 36.0 36.0 32.0 36.0 45 34.749105679671 36.0 36.0 36.0 32.0 36.0 46 34.726871457834164 36.0 36.0 36.0 32.0 36.0 47 34.694974563246475 36.0 36.0 36.0 32.0 36.0 48 34.67662760764434 36.0 36.0 36.0 32.0 36.0 49 34.6579643013618 36.0 36.0 36.0 32.0 36.0 50 34.25849088824241 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 8.0 20 38.0 21 91.0 22 245.0 23 629.0 24 1649.0 25 3942.0 26 8331.0 27 15669.0 28 26848.0 29 43900.0 30 65554.0 31 96722.0 32 146780.0 33 248756.0 34 572669.0 35 2381242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.685520378903384 17.706844907260646 12.250598508207737 26.35703620562823 2 15.839156668023838 20.27530739097353 37.424212690777814 26.461323250224815 3 18.422238385770765 24.52231732145645 28.337800451029434 28.717643841743364 4 12.95064761956426 16.504155182921597 35.5087545854255 35.03644261208864 5 14.70117722340896 36.62118559300408 33.36435028526923 15.31328689831772 6 33.94424416874823 34.901102246701214 17.322170173605585 13.83248341094497 7 29.99367021866945 30.176699706815157 21.08265554116032 18.74697453335507 8 27.79645836694963 33.299216540795264 19.489637508617996 19.414687583637114 9 27.263920882992043 14.934713578086722 18.514015331521954 39.287350207399285 10 16.012016360583814 27.220948145540337 31.840615498049583 24.92641999582627 11 36.00734996383971 21.469721531137292 23.064289488273022 19.458639016749977 12 24.87388180551823 23.270733908669033 29.16307669995591 22.692307585856828 13 29.451833187151454 20.239385853450756 25.194660841902433 25.114120117495354 14 23.440118524947838 19.322190298080944 25.684270950067795 31.553420226903423 15 24.885063404370623 27.369730913716527 22.40969544258512 25.33551023932773 16 25.33709783933003 25.992721930470854 23.988568094621545 24.68161213557757 17 24.042679387857284 26.08434523573938 25.390587916843227 24.482387459560115 18 24.30921626207076 25.74918282789982 26.037026683678977 23.904574226350444 19 25.40758173292087 25.17498233501122 25.496370270342826 23.921065661725084 20 25.691517569002297 24.893414682480376 25.299136357245423 24.115931391271907 21 25.579167009172515 24.66451725219252 25.053354799800836 24.702960938834128 22 25.503898475510777 24.71786528885751 25.09875925768576 24.679476977945956 23 24.713727385272996 24.880510434734717 25.384263883664808 25.021498296327476 24 24.87230335547065 24.9338579124868 25.398506250250826 24.795332481791725 25 24.983504323749234 24.754557622497003 25.50231548368312 24.759622570070643 26 24.68894770025834 25.10992073750269 25.518300564231183 24.68283099800778 27 24.758501238008094 25.400117684113916 25.103139663808705 24.738241414069286 28 24.7577726291305 25.053756804190165 25.182762063209534 25.005708503469805 29 24.888923946842915 25.09738961242048 25.109761379881068 24.903925060855535 30 24.852166976794262 25.13414644609827 25.203285110637086 24.810401466470378 31 25.22808172221455 24.678576578526453 25.179258962394574 24.914082736864422 32 24.87423347183151 25.141791796612495 25.08007098723403 24.903903744321962 33 24.70365221367209 25.113663757874537 25.25025124070423 24.93243278774914 34 24.97972627004885 25.036354326676907 25.384093771190546 24.599825632083697 35 24.95335682767199 25.134200315576592 25.325865628361928 24.586577228389494 36 24.704129892789297 25.254105093947754 25.29005787872481 24.751707134538144 37 25.164315948285765 24.87505566689704 25.027089608689046 24.933538776128152 38 24.975457220835747 25.150155864291925 25.1115738128062 24.762813102066133 39 25.16140085368223 25.053458929758595 24.903890171583377 24.881250044975804 40 25.23015028200363 24.964171782808766 25.228545000738983 24.577132934448617 41 24.966212691075086 24.954172978290046 25.321259669480824 24.758354661154048 42 25.01469039457168 25.20821887096395 25.083526967910863 24.69356376655351 43 24.82607572871052 24.992284640442104 25.25785907975343 24.923780551093948 44 24.75068164500432 25.1332221223039 25.107315322017932 25.00878091067385 45 24.770813093864085 25.311251899396346 25.08742066820002 24.830514338539547 46 25.02217696568182 24.95342491232314 25.045094316801382 24.97930380519366 47 25.08995889609827 25.119020303960184 25.061284973674514 24.72973582626703 48 24.927642211390197 25.464018451409082 24.802730401121078 24.80560893607964 49 25.01580428592306 25.111432670974143 24.885578077047416 24.987184966055384 50 24.82302952201918 25.52864187197899 24.861169234039444 24.787159371962385 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 151.0 1 140.0 2 129.0 3 370.0 4 611.0 5 617.5 6 624.0 7 527.0 8 430.0 9 588.5 10 747.0 11 1095.5 12 1444.0 13 2619.0 14 3794.0 15 4864.0 16 5934.0 17 5808.5 18 5683.0 19 5708.5 20 5734.0 21 6876.0 22 8018.0 23 10000.5 24 11983.0 25 15438.5 26 18894.0 27 24760.5 28 30627.0 29 37831.0 30 45035.0 31 54004.5 32 62974.0 33 74858.0 34 86742.0 35 99978.5 36 113215.0 37 126139.0 38 139063.0 39 152180.0 40 165297.0 41 178606.0 42 191915.0 43 202060.0 44 212205.0 45 226342.0 46 240479.0 47 252002.5 48 263526.0 49 269723.0 50 275920.0 51 278867.5 52 281815.0 53 280274.5 54 278734.0 55 269489.5 56 260245.0 57 246852.5 58 233460.0 59 215208.5 60 196957.0 61 174786.5 62 152616.0 63 131153.0 64 109690.0 65 91826.0 66 73962.0 67 61959.0 68 49956.0 69 40934.0 70 31912.0 71 25980.5 72 20049.0 73 16582.0 74 13115.0 75 10533.0 76 7951.0 77 6483.5 78 5016.0 79 4074.0 80 3132.0 81 2397.0 82 1662.0 83 1276.5 84 891.0 85 647.0 86 403.0 87 271.0 88 139.0 89 105.0 90 71.0 91 50.5 92 30.0 93 30.5 94 31.0 95 33.0 96 35.0 97 32.5 98 30.0 99 16.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03271447981070993 2 0.004760482679731054 3 3.0444947370373025E-4 4 2.7677224882157295E-5 5 2.7677224882157295E-5 6 1.1070889952862918E-4 7 0.0 8 0.0 9 0.0 10 1.3838612441078647E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 9.133484211111908E-4 17 0.0 18 2.490950239394157E-4 19 0.0 20 3.0444947370373025E-4 21 5.535444976431459E-5 22 0.0 23 5.535444976431459E-5 24 6.642533971717751E-4 25 3.0444947370373025E-4 26 5.812217225253032E-4 27 4.7051282299667404E-4 28 0.0013285067943435503 29 3.874811483502021E-4 30 0.0013838612441078647 31 2.7677224882157294E-4 32 9.687028708755053E-4 33 2.7677224882157294E-4 34 8.026395215825616E-4 35 2.7677224882157294E-4 36 1.9374057417510104E-4 37 0.0019374057417510106 38 0.0 39 6.919306220539323E-4 40 1.3838612441078647E-4 41 9.963800957576627E-4 42 0.004815837129495369 43 0.004317647081616538 44 0.0035426847849161338 45 0.0024632730145119994 46 0.0026570135886871005 47 0.0011070889952862917 48 0.0035980392346804486 49 0.0037364253590912353 50 0.0013008295694613928 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3613079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.97407788771141 #Duplication Level Percentage of deduplicated Percentage of total 1 67.38180116750134 32.99961578591494 2 16.590002484736278 16.249601476896004 3 6.488426885759687 9.532941710157472 4 3.2147755784097827 6.297626782742127 5 1.7654160912315402 4.322981257809624 6 1.0843869521540306 3.186411063312569 7 0.6993487467728381 2.3974971996588437 8 0.4928995378916544 1.9311440287618276 9 0.3660968261054223 1.61363290285178 >10 1.7898184849608596 15.516051253818802 >50 0.0938452833491232 3.1110580051350216 >100 0.032556860817329884 2.6064643863034855 >500 5.682730112202092E-4 0.18128883126578396 >1k 5.6827298859339074E-5 0.05368531537176578 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3838612441078647E-4 2 0.0 0.0 0.0 0.0 1.3838612441078647E-4 3 0.0 0.0 0.0 0.0 1.3838612441078647E-4 4 0.0 0.0 0.0 0.0 1.3838612441078647E-4 5 0.0 0.0 0.0 0.0 1.3838612441078647E-4 6 0.0 0.0 0.0 0.0 2.490950239394157E-4 7 0.0 0.0 0.0 0.0 2.490950239394157E-4 8 0.0 0.0 0.0 0.0 2.490950239394157E-4 9 0.0 0.0 0.0 0.0 2.490950239394157E-4 10 0.0 0.0 0.0 0.0 2.490950239394157E-4 11 0.0 0.0 0.0 2.7677224882157295E-5 2.7677224882157294E-4 12 0.0 0.0 0.0 2.7677224882157295E-5 6.642533971717751E-4 13 0.0 0.0 0.0 2.7677224882157295E-5 7.196078469360897E-4 14 0.0 0.0 0.0 5.535444976431459E-5 7.196078469360897E-4 15 0.0 0.0 0.0 1.1070889952862918E-4 8.026395215825616E-4 16 0.0 0.0 0.0 1.6606334929294378E-4 9.410256459933481E-4 17 0.0 0.0 0.0 2.2141779905725836E-4 9.687028708755054E-4 18 0.0 0.0 0.0 3.3212669858588757E-4 0.00102405732063982 19 0.0 0.0 0.0 3.5980392346804483E-4 0.0010517345455219773 20 0.0 0.0 0.0 4.981900478788314E-4 0.0012731523445792356 21 0.0 0.0 0.0 6.365761722896178E-4 0.001411538468990022 22 2.7677224882157295E-5 0.0 0.0 8.303167464647189E-4 0.001411538468990022 23 2.7677224882157295E-5 0.0 0.0 0.0014668929187543367 0.001411538468990022 24 2.7677224882157295E-5 0.0 0.0 0.001965082966633168 0.001411538468990022 25 2.7677224882157295E-5 0.0 0.0 0.0023802413398655276 0.001411538468990022 26 2.7677224882157295E-5 0.0 0.0 0.0029337858375086735 0.0016329562680472804 27 2.7677224882157295E-5 0.0 0.0 0.003847134258619864 0.001688310717811595 28 2.7677224882157295E-5 0.0 0.0 0.0046497737802024255 0.001688310717811595 29 2.7677224882157295E-5 0.0 0.0 0.0053970588520206725 0.001688310717811595 30 2.7677224882157295E-5 0.0 0.0 0.006697888421482065 0.001688310717811595 31 2.7677224882157295E-5 0.0 0.0 0.009299547560404851 0.0017159879426937523 32 2.7677224882157295E-5 0.0 0.0 0.012620814546263726 0.0017713423924580669 33 2.7677224882157295E-5 0.0 0.0 0.015499245934008086 0.0017713423924580669 34 2.7677224882157295E-5 0.0 0.0 0.019097285168688534 0.0018543740671045387 35 2.7677224882157295E-5 0.0 0.0 0.0233319005756586 0.0018543740671045387 36 2.7677224882157295E-5 0.0 0.0 0.02701297148498552 0.0018543740671045387 37 2.7677224882157295E-5 0.0 0.0 0.03481794890175388 0.0018543740671045387 38 2.7677224882157295E-5 0.0 0.0 0.04489245875885913 0.0019374057417510108 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4150 0.0 26.673801 1 GGTATCA 1745 0.0 20.178534 1 TATCAAC 6000 0.0 18.552994 2 TAGGACG 905 0.0 18.23146 4 TCAACGC 6075 0.0 18.070202 4 ATCAACG 6240 0.0 17.62764 3 AACGCAG 6365 0.0 17.419468 6 CAACGCA 6305 0.0 17.410778 5 GTAGGAC 1265 0.0 17.042933 3 TTAGGAC 790 0.0 16.429852 3 TAGGACC 1075 0.0 15.962278 4 TGTAGGA 1510 0.0 15.58912 2 TAGCGTA 175 6.424125E-8 15.085021 7 ACGCAGA 7350 0.0 15.02516 7 GCGTAAA 90 0.004351748 14.671475 1 CGTATAC 105 7.1654405E-4 14.666196 3 GTATAAA 670 0.0 14.452498 1 GTCCTAC 1230 0.0 14.313634 1 CGCAGAG 7845 0.0 14.245362 8 GTACATG 10110 0.0 14.083746 1 >>END_MODULE