FastQCFastQC Report
Thu 2 Feb 2017
SRR4061986_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4061986_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1609057
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGCTA250.002353643535.1981123
GGTATCA7400.026.768631
GTATCAA14200.022.6297551
CGGATCG951.5979567E-518.52589826
ATAGGGG1801.4551915E-1118.332923
GTATAGG2700.017.9338821
TAGGGGT2350.016.850164
GTATATA1702.4556357E-916.8309941
ATCGATT1451.2503006E-716.68927829
CCTACAC2252.5465852E-1115.6440913
TATCAAC20600.015.5933342
CAACCGC1004.946976E-415.39917319
GTTTATA2254.2564352E-1014.6731751
GTTATAG2102.5283953E-914.6731751
CGACTCA900.00435599514.66861442
TACTGCG1351.9577607E-514.665887
TTACACC3800.014.4729074
TATAGGG2753.6379788E-1214.4010182
TCAACGC22000.014.1992394
ATCAACG22200.014.0717533
Produced by FastQC (version 0.11.5)