##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061986_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1609057 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.2745216608237 32.0 32.0 32.0 32.0 32.0 2 31.408748726738704 32.0 32.0 32.0 32.0 32.0 3 31.538952939516747 32.0 32.0 32.0 32.0 32.0 4 31.628279793692826 32.0 32.0 32.0 32.0 32.0 5 31.597103769474916 32.0 32.0 32.0 32.0 32.0 6 35.22799875952188 36.0 36.0 36.0 36.0 36.0 7 35.23184076139005 36.0 36.0 36.0 36.0 36.0 8 35.18667144793503 36.0 36.0 36.0 36.0 36.0 9 35.28087009969193 36.0 36.0 36.0 36.0 36.0 10 35.15306853641605 36.0 36.0 36.0 36.0 36.0 11 35.2754756357295 36.0 36.0 36.0 36.0 36.0 12 35.208130600718306 36.0 36.0 36.0 36.0 36.0 13 35.23526574882058 36.0 36.0 36.0 36.0 36.0 14 35.20389955110353 36.0 36.0 36.0 36.0 36.0 15 35.174622154466874 36.0 36.0 36.0 36.0 36.0 16 35.18741971229111 36.0 36.0 36.0 36.0 36.0 17 35.174410850578944 36.0 36.0 36.0 36.0 36.0 18 35.168723668583524 36.0 36.0 36.0 36.0 36.0 19 35.16165306760419 36.0 36.0 36.0 36.0 36.0 20 35.159254768476195 36.0 36.0 36.0 36.0 36.0 21 35.14953727555954 36.0 36.0 36.0 36.0 36.0 22 35.13036579810411 36.0 36.0 36.0 36.0 36.0 23 35.1059931375955 36.0 36.0 36.0 36.0 36.0 24 35.091392660421604 36.0 36.0 36.0 36.0 36.0 25 35.08114317889298 36.0 36.0 36.0 36.0 36.0 26 35.03555312210817 36.0 36.0 36.0 36.0 36.0 27 35.00627634695353 36.0 36.0 36.0 36.0 36.0 28 35.000590407922154 36.0 36.0 36.0 36.0 36.0 29 34.97962906223956 36.0 36.0 36.0 36.0 36.0 30 34.95941784535911 36.0 36.0 36.0 36.0 36.0 31 34.95600963794322 36.0 36.0 36.0 36.0 36.0 32 34.92415557683786 36.0 36.0 36.0 36.0 36.0 33 34.90999510893648 36.0 36.0 36.0 32.0 36.0 34 34.90834569564658 36.0 36.0 36.0 36.0 36.0 35 34.88489034260439 36.0 36.0 36.0 32.0 36.0 36 34.85638855553284 36.0 36.0 36.0 32.0 36.0 37 34.85413444023425 36.0 36.0 36.0 32.0 36.0 38 34.847012256246984 36.0 36.0 36.0 32.0 36.0 39 34.82795326703778 36.0 36.0 36.0 32.0 36.0 40 34.815023955024586 36.0 36.0 36.0 32.0 36.0 41 34.78674465851738 36.0 36.0 36.0 32.0 36.0 42 34.75868412368238 36.0 36.0 36.0 32.0 36.0 43 34.75032146157656 36.0 36.0 36.0 32.0 36.0 44 34.717056636278265 36.0 36.0 36.0 32.0 36.0 45 34.69644953534897 36.0 36.0 36.0 32.0 36.0 46 34.68426786620984 36.0 36.0 36.0 32.0 36.0 47 34.65459582848836 36.0 36.0 36.0 32.0 36.0 48 34.621771633944604 36.0 36.0 36.0 32.0 36.0 49 34.61025308612436 36.0 36.0 36.0 32.0 36.0 50 34.194238613051 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 3.0 20 15.0 21 34.0 22 107.0 23 316.0 24 730.0 25 1880.0 26 3865.0 27 7440.0 28 12825.0 29 20634.0 30 30425.0 31 45452.0 32 68582.0 33 116588.0 34 267861.0 35 1032297.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.64633670974372 17.763797992307182 12.576398201320101 26.013467096629 2 16.163087071879655 19.699424666916514 37.47987080021454 26.657617460989286 3 18.987169487680656 23.03457619534447 28.292755685790727 29.685498631184142 4 13.310529086290915 16.040015984517638 34.27063180483973 36.37882312435172 5 14.962241859673089 36.420835309128265 33.056628820483056 15.560294010715591 6 35.38103755374276 34.19139444667488 16.567747260191393 13.85982073939097 7 30.95110987367135 29.993157482923227 19.867475173346875 19.188257470058552 8 28.071410770407763 33.91122875075277 18.519480664762032 19.497879814077436 9 26.959455134280514 15.466139484182351 18.383438249856905 39.19096713168023 10 16.90984222435874 27.11718727179957 30.99231413181758 24.98065637202411 11 36.62486785738479 21.741864955685227 22.01743008482608 19.615837102103903 12 24.671655510028543 23.711217191187135 28.363134432154986 23.253992866629336 13 29.506039873043655 20.045902662242543 24.793155245587943 25.65490221912586 14 23.557773279629 19.369978813677825 25.012351955213518 32.05989595147965 15 25.074002971927033 27.1189895696672 21.875732183508724 25.931275274897036 16 25.644606362535765 26.155841605325897 23.113911117408847 25.08564091472949 17 24.17347552013384 26.20273862268397 24.969531843806653 24.65425401337554 18 24.56079838116262 26.123391603524055 25.2305078257065 24.085302189606825 19 25.647444434846 25.439620846247212 25.03777056996738 23.875164148939408 20 25.914189064472243 25.017323897532016 24.797256018927953 24.271231019067784 21 25.920026450274914 24.695271826914773 24.794336061432254 24.590365661378062 22 25.65993622351477 24.473029855374918 25.060578960223285 24.806454960887027 23 25.004179471801773 24.84029445854865 25.25215110732697 24.903374962322605 24 24.95345062036837 25.043566241818123 25.048103097242837 24.954880040570675 25 25.09045687714645 24.786551601127123 25.145768880348328 24.977222641378102 26 24.987585881153844 24.991874112444883 25.160482394946104 24.860057611455172 27 25.155215424715394 25.213448398872877 24.895621899575776 24.735714276835953 28 25.54207822184546 24.713571268316056 25.072294705100372 24.672055804738108 29 24.9193468696766 25.06558213505973 25.14780451334358 24.86726648192009 30 25.1764875512496 25.16592222552993 24.789734480934868 24.867855742285602 31 25.246278401022217 24.990848654457 24.628834475930876 25.13403846858991 32 24.97108533322561 25.374678769083523 24.898495691543744 24.755740206147124 33 25.08348067654617 25.14451028709398 24.83942438263453 24.932584653725325 34 25.23630447090731 24.833768062710412 25.18633700569343 24.743590460688843 35 25.058264193157452 24.87411826854355 25.266772319070256 24.800845219228737 36 25.306049392997377 25.0954287426028 24.821789697548997 24.77673216685083 37 25.353676916144867 24.68389241932226 25.08612358415811 24.876307080374758 38 25.145473404609035 25.08307660946753 24.922796395652856 24.848653590270576 39 25.19262967000322 25.221777376159537 24.886547681048274 24.699045272788968 40 25.257589401965006 25.202898847955908 24.767301014944813 24.772210735134266 41 25.10096069586748 25.175849977812888 24.960442300449586 24.762747025870052 42 25.283563685451583 25.160318361999423 24.831415562347964 24.724702390201035 43 25.192496415455402 24.75843556614052 24.90722446551907 25.141843552885007 44 25.067200166065984 24.91424792681661 24.92773457286176 25.090817334255643 45 25.091033842401917 25.076615101021304 24.978107751502936 24.854243305073844 46 25.29931262507613 24.941765795328834 24.76743607910405 24.99148550049098 47 25.023942803268774 25.10486046674949 24.99982909095655 24.871367639025184 48 25.043691842614894 25.339093447093713 24.611372557793803 25.005842152497582 49 25.024999953387283 24.948057896722382 24.863844256350053 25.163097893540286 50 24.88256929312867 25.257949800936462 24.89220240218665 24.96727850374821 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 16.0 2 28.0 3 65.0 4 102.0 5 119.0 6 136.0 7 129.5 8 123.0 9 159.5 10 196.0 11 315.5 12 435.0 13 810.0 14 1185.0 15 1522.5 16 1860.0 17 1872.0 18 1884.0 19 1804.5 20 1725.0 21 2129.0 22 2533.0 23 3335.5 24 4138.0 25 5688.0 26 7238.0 27 9598.5 28 11959.0 29 14711.0 30 17463.0 31 21256.5 32 25050.0 33 29580.0 34 34110.0 35 39345.5 36 44581.0 37 50779.5 38 56978.0 39 64435.0 40 71892.0 41 77849.5 42 83807.0 43 88222.5 44 92638.0 45 100789.5 46 108941.0 47 114138.0 48 119335.0 49 121471.5 50 123608.0 51 127165.5 52 130723.0 53 131985.0 54 133247.0 55 129943.0 56 126639.0 57 119164.0 58 111689.0 59 102670.0 60 93651.0 61 80532.0 62 67413.0 63 57322.0 64 47231.0 65 39544.0 66 31857.0 67 26310.0 68 20763.0 69 16897.0 70 13031.0 71 10446.0 72 7861.0 73 6473.0 74 5085.0 75 4047.0 76 3009.0 77 2449.0 78 1889.0 79 1654.5 80 1420.0 81 1153.5 82 887.0 83 614.0 84 341.0 85 272.5 86 204.0 87 146.5 88 89.0 89 55.5 90 22.0 91 18.0 92 14.0 93 10.5 94 7.0 95 11.5 96 16.0 97 13.0 98 10.0 99 10.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03380862206870235 2 0.004723263377245181 3 1.2429640466434688E-4 4 0.0 5 0.0 6 1.8644460699652031E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.079266303182548E-4 17 0.0 18 6.214820233217344E-5 19 0.0 20 4.971856186573875E-4 21 0.0 22 0.0 23 1.2429640466434688E-4 24 8.079266303182548E-4 25 1.8644460699652031E-4 26 1.2429640466434688E-4 27 1.8644460699652031E-4 28 0.001118667641979122 29 3.7288921399304063E-4 30 0.0012429640466434686 31 2.4859280932869375E-4 32 7.457784279860813E-4 33 1.2429640466434688E-4 34 6.214820233217343E-4 35 4.350374163252141E-4 36 1.8644460699652031E-4 37 0.00198874247462955 38 0.0 39 6.836302256539078E-4 40 2.4859280932869375E-4 41 9.322230349826016E-4 42 0.004412522365584314 43 0.004101781353923447 44 0.0036045957352660598 45 0.0024859280932869373 46 0.0022994834862904174 47 8.700748326504282E-4 48 0.0037910403422625797 49 0.0033560029259373657 50 0.0014294086536399892 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1609057.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.89506038158367 #Duplication Level Percentage of deduplicated Percentage of total 1 56.560834799960624 20.302545803773654 2 16.088956201291484 11.55028108644026 3 8.45092778939601 9.100396898423195 4 5.076776899263722 7.289248533716017 5 3.319791464613911 5.958205753829122 6 2.2617287576020377 4.871093419253363 7 1.672629724578603 4.2027401471846435 8 1.197704478714674 3.4393339666205134 9 0.9132793381066728 2.950399528793262 >10 4.302050711947369 25.21179440125897 >50 0.11878195706073118 2.874976576709722 >100 0.035841950878246015 2.092669488886718 >500 6.959265859967144E-4 0.1563143951105753 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 6.214820233217344E-5 0.0 11 0.0 0.0 0.0 6.214820233217344E-5 0.0 12 0.0 0.0 0.0 6.214820233217344E-5 0.0 13 0.0 0.0 0.0 6.214820233217344E-5 0.0 14 0.0 0.0 0.0 1.2429640466434688E-4 0.0 15 0.0 0.0 0.0 1.8644460699652031E-4 0.0 16 0.0 0.0 0.0 3.107410116608672E-4 0.0 17 0.0 0.0 0.0 4.350374163252141E-4 0.0 18 0.0 0.0 0.0 5.593338209895609E-4 0.0 19 0.0 0.0 0.0 9.94371237314775E-4 0.0 20 0.0 0.0 0.0 0.0012429640466434689 0.0 21 0.0 0.0 0.0 0.0017401496653008564 0.0 22 0.0 0.0 0.0 0.0021751870816260704 0.0 23 0.0 0.0 0.0 0.0033560029259373657 0.0 24 0.0 0.0 0.0 0.004723263377245181 0.0 25 0.0 0.0 0.0 0.00577978281689213 0.0 26 0.0 0.0 0.0 0.008017118100850373 0.0 27 0.0 0.0 0.0 0.00957082315915471 0.0 28 0.0 0.0 0.0 0.011310972824455567 0.0 29 0.0 0.0 0.0 0.013796900917742504 0.0 30 0.0 0.0 0.0 0.016344977213361613 0.0 31 0.0 0.0 0.0 0.01858231249731986 0.0 32 0.0 0.0 0.0 0.022870538458239827 0.0 33 0.0 0.0 0.0 0.02653728239583806 0.0 34 0.0 0.0 0.0 0.03250350981972671 0.0 35 0.0 0.0 0.0 0.036916032185311025 0.0 36 0.0 0.0 0.0 0.04275796320453533 0.0 37 0.0 0.0 0.0 0.052515230970686555 0.0 38 0.0 0.0 0.0 0.06252109154616649 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGCTA 25 0.0023536435 35.19811 23 GGTATCA 740 0.0 26.76863 1 GTATCAA 1420 0.0 22.629755 1 CGGATCG 95 1.5979567E-5 18.525898 26 ATAGGGG 180 1.4551915E-11 18.33292 3 GTATAGG 270 0.0 17.933882 1 TAGGGGT 235 0.0 16.85016 4 GTATATA 170 2.4556357E-9 16.830994 1 ATCGATT 145 1.2503006E-7 16.689278 29 CCTACAC 225 2.5465852E-11 15.644091 3 TATCAAC 2060 0.0 15.593334 2 CAACCGC 100 4.946976E-4 15.399173 19 GTTTATA 225 4.2564352E-10 14.673175 1 GTTATAG 210 2.5283953E-9 14.673175 1 CGACTCA 90 0.004355995 14.668614 42 TACTGCG 135 1.9577607E-5 14.66588 7 TTACACC 380 0.0 14.472907 4 TATAGGG 275 3.6379788E-12 14.401018 2 TCAACGC 2200 0.0 14.199239 4 ATCAACG 2220 0.0 14.071753 3 >>END_MODULE