##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061974_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3006273 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.265571356959263 32.0 32.0 32.0 32.0 32.0 2 31.4133300601775 32.0 32.0 32.0 32.0 32.0 3 31.546011623029578 32.0 32.0 32.0 32.0 32.0 4 31.630123411945622 32.0 32.0 32.0 32.0 32.0 5 31.596116852993724 32.0 32.0 32.0 32.0 32.0 6 35.23725889165755 36.0 36.0 36.0 36.0 36.0 7 35.23982319636307 36.0 36.0 36.0 36.0 36.0 8 35.19064003834649 36.0 36.0 36.0 36.0 36.0 9 35.2863236306217 36.0 36.0 36.0 36.0 36.0 10 35.16059419753296 36.0 36.0 36.0 36.0 36.0 11 35.28391599831419 36.0 36.0 36.0 36.0 36.0 12 35.210170200776844 36.0 36.0 36.0 36.0 36.0 13 35.240310843359865 36.0 36.0 36.0 36.0 36.0 14 35.20676964467299 36.0 36.0 36.0 36.0 36.0 15 35.17750749848733 36.0 36.0 36.0 36.0 36.0 16 35.19782168818334 36.0 36.0 36.0 36.0 36.0 17 35.17926216281755 36.0 36.0 36.0 36.0 36.0 18 35.17253156982084 36.0 36.0 36.0 36.0 36.0 19 35.165595074033526 36.0 36.0 36.0 36.0 36.0 20 35.16798241543599 36.0 36.0 36.0 36.0 36.0 21 35.16233522371388 36.0 36.0 36.0 36.0 36.0 22 35.14026437386092 36.0 36.0 36.0 36.0 36.0 23 35.10680067977858 36.0 36.0 36.0 36.0 36.0 24 35.09165934031939 36.0 36.0 36.0 36.0 36.0 25 35.08427311824309 36.0 36.0 36.0 36.0 36.0 26 35.03854639947869 36.0 36.0 36.0 36.0 36.0 27 35.02657376758531 36.0 36.0 36.0 36.0 36.0 28 35.00709050708302 36.0 36.0 36.0 36.0 36.0 29 34.989319333274125 36.0 36.0 36.0 36.0 36.0 30 34.972058425831584 36.0 36.0 36.0 36.0 36.0 31 34.9678352564787 36.0 36.0 36.0 36.0 36.0 32 34.93743249531895 36.0 36.0 36.0 36.0 36.0 33 34.916220516233885 36.0 36.0 36.0 32.0 36.0 34 34.90262926886547 36.0 36.0 36.0 32.0 36.0 35 34.894492283302284 36.0 36.0 36.0 32.0 36.0 36 34.87336645740424 36.0 36.0 36.0 32.0 36.0 37 34.862059433724085 36.0 36.0 36.0 32.0 36.0 38 34.85239331225075 36.0 36.0 36.0 32.0 36.0 39 34.83381615708221 36.0 36.0 36.0 32.0 36.0 40 34.82737695478754 36.0 36.0 36.0 32.0 36.0 41 34.798342998124255 36.0 36.0 36.0 32.0 36.0 42 34.77952567847298 36.0 36.0 36.0 32.0 36.0 43 34.76542183627369 36.0 36.0 36.0 32.0 36.0 44 34.729566476497645 36.0 36.0 36.0 32.0 36.0 45 34.72342066073174 36.0 36.0 36.0 32.0 36.0 46 34.70322522272595 36.0 36.0 36.0 32.0 36.0 47 34.679674467355426 36.0 36.0 36.0 32.0 36.0 48 34.66128625045031 36.0 36.0 36.0 32.0 36.0 49 34.64721866576988 36.0 36.0 36.0 32.0 36.0 50 34.224888092332264 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 9.0 20 19.0 21 85.0 22 197.0 23 547.0 24 1330.0 25 3347.0 26 7376.0 27 13688.0 28 23320.0 29 37085.0 30 56474.0 31 84012.0 32 127529.0 33 217438.0 34 495864.0 35 1937949.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.899798192214845 17.6165718630369 12.355328108180952 26.128301836567303 2 16.35908990054665 19.65002879114131 36.83280147618219 27.15807983212985 3 18.956890997228122 22.81457078106606 28.150996769078418 30.0775414526274 4 13.255183411486582 16.105955779797775 34.283712756625896 36.355148052089746 5 15.202145646785903 35.99184106034282 32.88430558369117 15.921707709180104 6 35.47361712262513 33.943780128717734 16.533655682061614 14.048947066595527 7 31.354404606634194 29.6467087320413 19.786493109574547 19.212393551749958 8 28.61207215711946 33.20925943851407 18.50966296141435 19.66900544295212 9 27.109048313310204 14.938862837806147 18.421347628774896 39.53074122010875 10 17.11016168862964 26.868926031975814 30.621780065143806 25.39913221425074 11 36.74014302759596 21.392435084904132 21.75906845452825 20.108353432971658 12 24.644534944098556 23.389292988361337 28.348090808785496 23.61808125875461 13 29.862856766501245 19.714210918303163 24.657341498925746 25.765590816269846 14 23.933588200406284 18.93437488877424 24.88925656452358 32.242780346295895 15 25.544652797666746 26.69474794870592 21.794494378920344 25.966104874706986 16 25.98452489100197 25.72719407287558 23.221411946523357 25.06686908959909 17 24.596568575109444 25.721616100733367 24.677266502410127 25.004548821747058 18 24.97021225638416 25.379224088322072 25.145745392130447 24.504818263163322 19 25.940425237495063 24.87658306481148 24.936624185494797 24.24636751219866 20 26.114266193121622 24.535694006608207 24.629930668029157 24.720109132241014 21 26.39224714455407 24.41917284291879 24.4509064878672 24.737673524659936 22 26.249612061180073 24.107990192507465 24.59197817363892 25.050419572673537 23 25.241794488323077 24.504003629744748 24.837839024546014 25.41636285738616 24 25.111251559251556 24.61738045738046 24.821987525987527 25.449380457380457 25 25.312987835079188 24.411837005828158 24.91555141309804 25.359623745994618 26 25.29043533450001 24.873805119512166 24.887576369732123 24.948183176255704 27 25.52439724960674 24.812815653730663 24.631028377110304 25.031758719552293 28 25.483670416544836 24.47573057426392 24.92283527114184 25.117763738049405 29 25.222926715846317 24.772765601876355 24.830777940808122 25.17352974146921 30 25.34421690321877 24.682959866198487 24.88254446412201 25.090278766460738 31 25.466518664239285 24.634986296913404 24.60142296550162 25.297072073345696 32 25.552208818642523 24.68691008217893 24.553454558760183 25.207426540418364 33 25.31989829250087 24.71133644771524 24.547212690285765 25.42155256949813 34 25.465080462263 24.598353964768112 24.959866997266367 24.976698575702518 35 25.518791935369595 24.63630094905203 25.00965484390421 24.835252271674168 36 25.374634180741158 24.694687695633057 24.757157217624787 25.173520906001002 37 25.617279946563997 24.644594378375718 24.731747218177823 25.006378456882462 38 25.417119469855198 24.689940002122228 24.809190649019566 25.083749879003005 39 25.605838240890304 24.743234756413976 24.575184748563657 25.07574225413206 40 25.86501855292198 24.47931236933537 24.552958571516484 25.102710506226167 41 25.191269082001543 24.803342119514234 24.794161203578163 25.211227594906056 42 25.552240096869056 24.674863278911022 24.787300573496733 24.985596050723192 43 25.604113178951625 24.276963629795265 24.692479596772205 25.4264435944809 44 25.129651399902464 24.687855314692804 24.94183567088404 25.24065761452069 45 25.37584662164657 24.68960116931169 24.675264194519816 25.259288014521925 46 25.409329734099085 24.7558125803549 24.61270809112516 25.222149594420856 47 25.388748570061892 24.73321404847037 24.842453170046795 25.035584211420943 48 25.49804269089419 25.139446631059876 24.39278177400598 24.96972890403996 49 25.455281518427814 24.846132710080163 24.510588584381015 25.187997187111005 50 25.36477799968864 25.015734086617975 24.368707196964152 25.250780716729228 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 12.0 1 31.0 2 50.0 3 138.5 4 227.0 5 259.5 6 292.0 7 268.0 8 244.0 9 309.0 10 374.0 11 612.5 12 851.0 13 1649.0 14 2447.0 15 3046.5 16 3646.0 17 3670.0 18 3694.0 19 3747.0 20 3800.0 21 4512.5 22 5225.0 23 6764.0 24 8303.0 25 11128.5 26 13954.0 27 17479.0 28 21004.0 29 25439.0 30 29874.0 31 36235.5 32 42597.0 33 49047.0 34 55497.0 35 65724.5 36 75952.0 37 86835.5 38 97719.0 39 109688.0 40 121657.0 41 133167.5 42 144678.0 43 155120.0 44 165562.0 45 179313.0 46 193064.0 47 206128.0 48 219192.0 49 229226.5 50 239261.0 51 241999.0 52 244737.0 53 244376.0 54 244015.0 55 242535.5 56 241056.0 57 232198.5 58 223341.0 59 204011.5 60 184682.0 61 161188.5 62 137695.0 63 118660.5 64 99626.0 65 83146.0 66 66666.0 67 55094.5 68 43523.0 69 35869.0 70 28215.0 71 22016.0 72 15817.0 73 13286.5 74 10756.0 75 8555.0 76 6354.0 77 5381.5 78 4409.0 79 3642.0 80 2875.0 81 2281.5 82 1688.0 83 1263.5 84 839.0 85 625.0 86 411.0 87 283.0 88 155.0 89 108.5 90 62.0 91 54.5 92 47.0 93 48.5 94 50.0 95 40.0 96 30.0 97 34.0 98 38.0 99 24.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03120142448806213 2 0.004656929028068975 3 3.3263778771921244E-4 4 0.0 5 0.0 6 1.6631889385960622E-4 7 0.0 8 0.0 9 0.0 10 3.326377877192125E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.648582480699523E-4 17 0.0 18 9.979133631576374E-5 19 0.0 20 3.9916534526305495E-4 21 0.0 22 0.0 23 3.326377877192125E-5 24 7.650669117541885E-4 25 1.9958267263152748E-4 26 3.3263778771921244E-4 27 3.9916534526305495E-4 28 0.0013970787084206923 29 5.3222046035074E-4 30 9.646495843857161E-4 31 5.3222046035074E-4 32 9.313858056137949E-4 33 1.6631889385960622E-4 34 6.320117966665037E-4 35 3.3263778771921244E-4 36 2.3284645140344873E-4 37 0.001995826726315275 38 0.0 39 8.315944692980312E-4 40 2.6611023017537E-4 41 0.001230759814561086 42 0.0050893581521039505 43 0.004357555019121683 44 0.004490610134209368 45 0.001995826726315275 46 0.002594574744209857 47 7.983306905261099E-4 48 0.0034926967710517307 49 0.0036922794436832587 50 0.0020290905050871963 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3006273.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.88293486745856 #Duplication Level Percentage of deduplicated Percentage of total 1 63.67755304030164 27.30680359546393 2 16.666369349445556 14.29405662578563 3 7.3442401701949365 9.448277186083267 4 3.902758941589366 6.694470299822733 5 2.302963154453097 4.937890947728453 6 1.4395123129282472 3.703830765372399 7 0.9802839420181999 2.9426216706027395 8 0.6876464742903389 2.3590639175064094 9 0.5028692765530427 1.9408059389943122 >10 2.3197671332395386 17.129766874223787 >50 0.11392588511090133 3.3200882958874476 >100 0.05805931407170094 4.635633886565774 >500 0.0033498701839044342 0.9275927412525758 >1k 7.011356197638573E-4 0.3590972547105142 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.33055115087685E-4 2 0.0 0.0 0.0 0.0 1.33055115087685E-4 3 0.0 0.0 0.0 0.0 1.33055115087685E-4 4 0.0 0.0 0.0 0.0 1.6631889385960622E-4 5 0.0 0.0 0.0 0.0 1.9958267263152748E-4 6 0.0 0.0 0.0 0.0 1.9958267263152748E-4 7 0.0 0.0 0.0 0.0 1.9958267263152748E-4 8 0.0 0.0 0.0 0.0 1.9958267263152748E-4 9 0.0 0.0 0.0 0.0 1.9958267263152748E-4 10 0.0 0.0 0.0 0.0 1.9958267263152748E-4 11 0.0 0.0 0.0 0.0 2.3284645140344873E-4 12 0.0 0.0 0.0 6.65275575438425E-5 6.320117966665036E-4 13 0.0 0.0 0.0 6.65275575438425E-5 8.648582480699524E-4 14 0.0 0.0 0.0 9.979133631576374E-5 8.981220268418737E-4 15 0.0 0.0 0.0 3.659015664911337E-4 9.979133631576374E-4 16 0.0 0.0 0.0 4.324291240349762E-4 0.0010977046994734012 17 0.0 0.0 0.0 5.987480178945824E-4 0.0010977046994734012 18 0.0 0.0 0.0 8.315944692980312E-4 0.0010977046994734012 19 0.0 0.0 0.0 0.0011974960357891648 0.0010977046994734012 20 0.0 0.0 0.0 0.0014636062659645348 0.0012972873721049285 21 0.0 0.0 0.0 0.0016964527173679836 0.0014303424871926135 22 0.0 0.0 0.0 0.0020956180626310384 0.0014636062659645348 23 0.0 0.0 0.0 0.002960476310700991 0.0014636062659645348 24 0.0 0.0 0.0 0.004124708567718235 0.0014636062659645348 25 0.0 0.0 0.0 0.0053554683822793206 0.0014636062659645348 26 0.0 0.0 0.0 0.006785810869471934 0.001496870044736456 27 0.0 0.0 0.0 0.007816988011401493 0.0015633976022802986 28 0.0 0.0 0.0 0.009114275383506421 0.0016631889385960623 29 0.0 0.0 0.0 0.010877255658418248 0.0016964527173679836 30 0.0 0.0 0.0 0.012440653260698546 0.0016964527173679836 31 0.0 0.0 0.0 0.014735853995961112 0.0017297164961399048 32 0.0 0.0 0.0 0.01842813343964437 0.001762980274911826 33 0.0 0.0 0.0 0.021987357768239943 0.0017962440536837473 34 0.0 0.0 0.0 0.026245121451045864 0.0018960353899995111 35 0.0 0.0 0.0 0.030336566239992178 0.0018960353899995111 36 0.0 0.0 0.0 0.03575856217981534 0.0018960353899995111 37 0.0 0.0 0.0 0.04434061710297102 0.0018960353899995111 38 0.0 0.0 0.0 0.055217872761389265 0.0019292991687714324 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3155 0.0 26.78585 1 GGTATCA 1785 0.0 21.206245 1 TATCAAC 4800 0.0 17.371668 2 CGGATCG 305 0.0 17.311443 26 TCAACGC 4915 0.0 16.919039 4 ATCAACG 4990 0.0 16.665022 3 CAACGCA 5105 0.0 16.28934 5 TATGCGA 150 1.840981E-7 16.132767 17 AACGCAG 5290 0.0 15.719673 6 GGCGTTA 435 0.0 15.679174 42 ATTAGAC 290 0.0 14.413527 3 GTATAGG 460 0.0 14.352812 1 TATACCG 140 2.760242E-5 14.14236 5 CGATTTT 390 0.0 14.1023035 31 ATCGATT 365 0.0 13.862757 29 ATACCGT 420 0.0 13.618568 6 ACCGATA 130 2.3330118E-4 13.537986 8 ACGCAGA 6215 0.0 13.38006 7 GGATCGA 380 0.0 13.315764 27 CGGCGTT 530 0.0 13.283878 41 >>END_MODULE