##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061973_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 101285 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.88367477908871 32.0 32.0 32.0 32.0 32.0 2 30.552618847805697 32.0 32.0 32.0 32.0 32.0 3 31.129041812706717 32.0 32.0 32.0 32.0 32.0 4 31.396218591104308 32.0 32.0 32.0 32.0 32.0 5 31.261104803277878 32.0 32.0 32.0 32.0 32.0 6 34.95767389050698 36.0 36.0 36.0 36.0 36.0 7 34.93531125043195 36.0 36.0 36.0 36.0 36.0 8 34.88640963617515 36.0 36.0 36.0 32.0 36.0 9 35.047213308979615 36.0 36.0 36.0 36.0 36.0 10 34.766855901663625 36.0 36.0 36.0 32.0 36.0 11 35.08873969492027 36.0 36.0 36.0 36.0 36.0 12 34.96284741077159 36.0 36.0 36.0 32.0 36.0 13 35.01837389544355 36.0 36.0 36.0 36.0 36.0 14 34.977538628622206 36.0 36.0 36.0 32.0 36.0 15 34.9011699659377 36.0 36.0 36.0 32.0 36.0 16 34.93152984153626 36.0 36.0 36.0 32.0 36.0 17 34.94393049316286 36.0 36.0 36.0 32.0 36.0 18 34.874236066544896 36.0 36.0 36.0 32.0 36.0 19 34.92575406032483 36.0 36.0 36.0 32.0 36.0 20 34.89050698523967 36.0 36.0 36.0 32.0 36.0 21 34.8610949301476 36.0 36.0 36.0 32.0 36.0 22 34.900103667867896 36.0 36.0 36.0 32.0 36.0 23 34.83654045515131 36.0 36.0 36.0 32.0 36.0 24 34.840864886212174 36.0 36.0 36.0 32.0 36.0 25 34.82699313817446 36.0 36.0 36.0 32.0 36.0 26 34.748008095966824 36.0 36.0 36.0 32.0 36.0 27 34.74751443945303 36.0 36.0 36.0 32.0 36.0 28 34.72164683813003 36.0 36.0 36.0 32.0 36.0 29 34.686537986868736 36.0 36.0 36.0 32.0 36.0 30 34.675371476526635 36.0 36.0 36.0 32.0 36.0 31 34.638051044083525 36.0 36.0 36.0 32.0 36.0 32 34.61237103223577 36.0 36.0 36.0 32.0 36.0 33 34.58946536999556 36.0 36.0 36.0 32.0 36.0 34 34.58551611788518 36.0 36.0 36.0 32.0 36.0 35 34.58184331342252 36.0 36.0 36.0 32.0 36.0 36 34.51396554277534 36.0 36.0 36.0 32.0 36.0 37 34.51750012341413 36.0 36.0 36.0 32.0 36.0 38 34.538401540208326 36.0 36.0 36.0 32.0 36.0 39 34.49360714814632 36.0 36.0 36.0 32.0 36.0 40 34.46213160882658 36.0 36.0 36.0 32.0 36.0 41 34.453374142271805 36.0 36.0 36.0 32.0 36.0 42 34.414098830034064 36.0 36.0 36.0 32.0 36.0 43 34.40540060226095 36.0 36.0 36.0 32.0 36.0 44 34.3720392950585 36.0 36.0 36.0 32.0 36.0 45 34.338352174556945 36.0 36.0 36.0 32.0 36.0 46 34.32874561879844 36.0 36.0 36.0 32.0 36.0 47 34.25984104260256 36.0 36.0 36.0 32.0 36.0 48 34.24405390729131 36.0 36.0 36.0 32.0 36.0 49 34.22129634200523 36.0 36.0 36.0 32.0 36.0 50 33.65569432788666 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 1.0 22 3.0 23 11.0 24 35.0 25 84.0 26 208.0 27 431.0 28 772.0 29 1367.0 30 2224.0 31 3801.0 32 6620.0 33 12214.0 34 26432.0 35 47081.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.08046294833307 17.44647653657766 12.578013904250277 26.895046610838996 2 16.56644647846994 19.285721338507262 35.99435212338438 28.15348005963842 3 18.969245199190404 21.890704447845188 28.222342893814485 30.917707459149923 4 13.23789307399911 16.029027003011304 34.26963518783631 36.46344473515328 5 15.51266228957891 35.457372760033564 32.95255960902404 16.07740534136348 6 35.73974428592585 33.76314360467986 15.945105395665696 14.552006713728588 7 30.909808954929158 29.529545342350794 19.695907587500617 19.86473811521943 8 28.436589820802688 32.5102433726613 18.569383423014266 20.483783383521743 9 26.846028533346498 14.341709038850766 17.77064718368959 41.041615244113146 10 16.4594954830429 26.4590018265291 31.586118378832005 25.49538431159599 11 36.85836994619144 20.975465271264255 21.690279903243322 20.47588487930098 12 24.517944414276545 22.776324233598263 28.38228760428494 24.323443747840255 13 29.797107172829147 19.40958680949795 24.290862417929603 26.502443599743298 14 23.923581971664117 18.219874611245494 24.804265192279214 33.052278224811175 15 25.238682924421184 26.372118280100704 21.947968603445723 26.441230192032382 16 25.643000306073084 25.87601078167116 23.071986414304472 25.409002497951285 17 25.020486745322607 25.15476131707558 24.4636421977588 25.36110973984302 18 25.045169571012487 25.455891790492174 24.874364417238485 24.62457422125685 19 25.911043096213653 24.83684652218986 24.84770696549341 24.404403416103076 20 26.052228859159797 24.458705632620823 24.599891395566964 24.889174112652416 21 25.29890901910451 24.46759144986918 24.9790195981636 25.254479932862715 22 25.610899935824655 23.992693883595795 24.666041368415854 25.730364812163696 23 25.511433197741006 24.607045535326407 23.868528099206195 26.012993167726396 24 25.068372777267655 24.680351095445435 24.74748970705844 25.50378642022847 25 25.456879103519768 24.715407019795627 24.508071284000593 25.319642592684012 26 25.706923107302238 24.316772639311242 24.576438529283994 25.399865724102522 27 25.512168633065112 24.899047242928372 24.26815421829491 25.320629905711606 28 25.65879762645261 24.234076794723695 24.289367416052052 25.817758162771643 29 25.685202006239884 24.658386319655623 24.52509774495478 25.13131392914972 30 26.011018522175274 24.3592275186604 24.018601161091585 25.611152798072744 31 24.9997531717431 24.970133780915237 24.513995162166164 25.516117885175493 32 25.643734449666283 24.598159630346352 24.025512420520517 25.732593499466844 33 25.230784420200425 24.610751838870513 24.33232956508861 25.826134175840448 34 25.95053561731747 24.529792170607692 24.22372513205312 25.29594708002172 35 26.053216172187394 24.40144147702029 24.14375277681789 25.40158957397443 36 25.571407414720838 24.41625117243422 24.559411561435553 25.45292985140939 37 26.01668559016636 24.52584291849731 24.01935133534087 25.43812015599546 38 25.90413190502049 24.14868934195587 24.25531914893617 25.691859604087476 39 25.384068559693535 24.75613127443624 24.509300580545794 25.35049958532443 40 26.343486202300436 24.12499382929358 23.87125438120156 25.66026558720442 41 25.17352026459989 24.368860147109643 24.19114380214247 26.266475786147996 42 25.537376948824537 24.27354140542462 24.588512919756315 25.60056872599453 43 25.51193696806935 24.417961730613534 24.387354120179303 25.68274718113781 44 25.66624208852948 24.2996929213938 24.156521223969904 25.877543766106815 45 25.455155799533983 24.366138778089333 24.286165633268826 25.892539789107854 46 25.721986907970734 24.340708707285525 24.27357009567252 25.663734289071215 47 25.677049908673546 24.446857876289677 24.13289233351434 25.74319988152244 48 25.76272190517565 24.69244288224956 23.939100728658598 25.605734483916194 49 25.66325371984874 24.74304163663471 23.892931546884412 25.70077309663214 50 25.44824454010505 24.12227005252557 24.099561628687653 26.329923778681724 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 2.0 4 4.0 5 6.0 6 8.0 7 6.5 8 5.0 9 7.5 10 10.0 11 14.5 12 19.0 13 38.5 14 58.0 15 77.0 16 96.0 17 101.0 18 106.0 19 103.0 20 100.0 21 128.0 22 156.0 23 241.5 24 327.0 25 422.5 26 518.0 27 579.0 28 640.0 29 741.5 30 843.0 31 1017.5 32 1192.0 33 1497.5 34 1803.0 35 1935.5 36 2068.0 37 2355.5 38 2643.0 39 3174.0 40 3705.0 41 3977.5 42 4250.0 43 5075.5 44 5901.0 45 6199.5 46 6498.0 47 7126.0 48 7754.0 49 7893.5 50 8033.0 51 8421.5 52 8810.0 53 8770.5 54 8731.0 55 8265.5 56 7800.0 57 7555.0 58 7310.0 59 6810.0 60 6310.0 61 5755.5 62 5201.0 63 4521.0 64 3841.0 65 3140.0 66 2439.0 67 2003.0 68 1567.0 69 1322.5 70 1078.0 71 800.5 72 523.0 73 430.0 74 337.0 75 291.5 76 246.0 77 184.0 78 122.0 79 100.0 80 78.0 81 71.5 82 65.0 83 54.0 84 43.0 85 39.0 86 35.0 87 21.0 88 7.0 89 4.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02073357357950338 2 0.007898504220763193 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0019746260551907983 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 9.873130275953991E-4 24 0.0019746260551907983 25 0.0 26 9.873130275953991E-4 27 0.0 28 0.0019746260551907983 29 9.873130275953991E-4 30 9.873130275953991E-4 31 0.0 32 9.873130275953991E-4 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 9.873130275953991E-4 40 0.0 41 0.0 42 0.005923878165572395 43 0.0029619390827861974 44 0.007898504220763193 45 9.873130275953991E-4 46 0.0019746260551907983 47 0.0 48 0.0029619390827861974 49 0.0039492521103815965 50 9.873130275953991E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 101285.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.70193019696895 #Duplication Level Percentage of deduplicated Percentage of total 1 65.52801882629798 35.189810929555215 2 16.252390057361378 17.455694327886658 3 7.559935284600676 12.179493508416844 4 3.932563612295926 8.447450264106235 5 2.2760700102956317 6.11146764081552 6 1.4211648771878218 4.579157821987461 7 0.9045447859979409 3.4003060670385548 8 0.5791292837181938 2.488028829540406 9 0.43388733637299604 2.097052870612628 >10 1.1086189145462568 7.944907933060177 >50 0.0036770113251948814 0.1066298069803031 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 0.0 0.0 23 0.0 0.0 0.0 0.0 0.0 24 0.0 0.0 0.0 9.873130275953991E-4 0.0 25 0.0 0.0 0.0 9.873130275953991E-4 0.0 26 0.0 0.0 0.0 9.873130275953991E-4 0.0 27 0.0 0.0 0.0 9.873130275953991E-4 0.0 28 0.0 0.0 0.0 9.873130275953991E-4 0.0 29 0.0 0.0 0.0 9.873130275953991E-4 0.0 30 0.0 0.0 0.0 0.0019746260551907983 0.0 31 0.0 0.0 0.0 0.005923878165572395 0.0 32 0.0 0.0 0.0 0.005923878165572395 0.0 33 0.0 0.0 0.0 0.007898504220763193 0.0 34 0.0 0.0 0.0 0.008885817248358591 0.0 35 0.0 0.0 0.0 0.012835069358740188 0.0 36 0.0 0.0 0.0 0.017771634496717183 0.0 37 0.0 0.0 0.0 0.02270819963469418 0.0 38 0.0 0.0 0.0 0.03455595596583897 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCAA 25 0.0023426584 35.2 11 CATAATC 25 0.0023426584 35.2 2 TTAGGCT 30 0.0057205046 29.333336 4 GCGCGGG 30 0.0057205046 29.333336 13 ATAATCC 30 0.0057205046 29.333336 3 TATAACA 30 0.0057205046 29.333336 4 ATCAACG 85 2.3087523E-7 23.294119 2 TCAACGC 90 4.0059967E-7 21.999998 3 GTCCAAG 55 0.0044557876 20.0 1 GTATCAA 80 8.8854E-5 19.25 1 AACGCAG 110 2.745459E-6 18.0 5 ACGCAGA 135 1.0615968E-6 16.296295 6 TATCAAC 125 9.270594E-6 15.839998 1 CAACGCA 125 9.270594E-6 15.839998 4 ATGGGGG 85 0.0029547955 15.529412 17 CGCAGAG 145 2.2356799E-6 15.172415 7 GAGTACA 160 6.2058534E-6 13.75 11 AGAGTAC 145 3.768203E-5 13.655173 10 GCAGAGT 145 3.768203E-5 13.655173 8 AGTACAT 135 3.1622127E-4 13.037037 12 >>END_MODULE