##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061970_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2118790 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28447038168011 32.0 32.0 32.0 32.0 32.0 2 31.457795251063107 32.0 32.0 32.0 32.0 32.0 3 31.579713421339537 32.0 32.0 32.0 32.0 32.0 4 31.65975061237782 32.0 32.0 32.0 32.0 32.0 5 31.634914739072773 32.0 32.0 32.0 32.0 32.0 6 35.28854534899636 36.0 36.0 36.0 36.0 36.0 7 35.29559229560268 36.0 36.0 36.0 36.0 36.0 8 35.24640006796332 36.0 36.0 36.0 36.0 36.0 9 35.321428268020895 36.0 36.0 36.0 36.0 36.0 10 35.21573162040599 36.0 36.0 36.0 36.0 36.0 11 35.32834872733966 36.0 36.0 36.0 36.0 36.0 12 35.2537490737638 36.0 36.0 36.0 36.0 36.0 13 35.28871478532559 36.0 36.0 36.0 36.0 36.0 14 35.25033155716234 36.0 36.0 36.0 36.0 36.0 15 35.22845586396009 36.0 36.0 36.0 36.0 36.0 16 35.24233831573681 36.0 36.0 36.0 36.0 36.0 17 35.22468531567546 36.0 36.0 36.0 36.0 36.0 18 35.219370017793175 36.0 36.0 36.0 36.0 36.0 19 35.21026765276408 36.0 36.0 36.0 36.0 36.0 20 35.21524549389038 36.0 36.0 36.0 36.0 36.0 21 35.20227252346859 36.0 36.0 36.0 36.0 36.0 22 35.191646175411435 36.0 36.0 36.0 36.0 36.0 23 35.16364104040514 36.0 36.0 36.0 36.0 36.0 24 35.14644679274492 36.0 36.0 36.0 36.0 36.0 25 35.12792301266289 36.0 36.0 36.0 36.0 36.0 26 35.086285568650034 36.0 36.0 36.0 36.0 36.0 27 35.077337536990456 36.0 36.0 36.0 36.0 36.0 28 35.06117737010275 36.0 36.0 36.0 36.0 36.0 29 35.04136511877062 36.0 36.0 36.0 36.0 36.0 30 35.020281858985555 36.0 36.0 36.0 36.0 36.0 31 35.02426951231599 36.0 36.0 36.0 36.0 36.0 32 35.00092269644467 36.0 36.0 36.0 36.0 36.0 33 34.979567583384856 36.0 36.0 36.0 36.0 36.0 34 34.97009189207047 36.0 36.0 36.0 36.0 36.0 35 34.95701225699574 36.0 36.0 36.0 36.0 36.0 36 34.94025977090698 36.0 36.0 36.0 36.0 36.0 37 34.927361843316234 36.0 36.0 36.0 36.0 36.0 38 34.912933325152565 36.0 36.0 36.0 36.0 36.0 39 34.90637580883429 36.0 36.0 36.0 36.0 36.0 40 34.88175279286763 36.0 36.0 36.0 32.0 36.0 41 34.86207458030291 36.0 36.0 36.0 32.0 36.0 42 34.832907933301556 36.0 36.0 36.0 32.0 36.0 43 34.82860783749215 36.0 36.0 36.0 32.0 36.0 44 34.78847030616531 36.0 36.0 36.0 32.0 36.0 45 34.77455387272925 36.0 36.0 36.0 32.0 36.0 46 34.76352446443489 36.0 36.0 36.0 32.0 36.0 47 34.73486848625867 36.0 36.0 36.0 32.0 36.0 48 34.71637160832362 36.0 36.0 36.0 32.0 36.0 49 34.702397122886175 36.0 36.0 36.0 32.0 36.0 50 34.29574474110223 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 8.0 20 18.0 21 43.0 22 145.0 23 396.0 24 943.0 25 2314.0 26 4800.0 27 8909.0 28 15390.0 29 24815.0 30 36897.0 31 55336.0 32 83936.0 33 144543.0 34 333963.0 35 1406331.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.23666158356664 17.47772799592093 12.147649105578978 26.137961314933456 2 16.353309997960988 19.45586669385351 37.00039458679777 27.19042872138774 3 18.813680273816917 23.08135594500252 28.159636546931548 29.945327234249014 4 12.929785396381895 15.644825584413747 34.798965447259995 36.626423571944365 5 14.90540115131804 36.45171841084695 32.96854948746667 15.674330950368349 6 35.65878228496669 34.47310443517709 16.085752798297897 13.782360481558326 7 31.306358818004615 29.761656417105993 19.814092005342673 19.117892759546724 8 28.563991712250857 33.09148145875712 18.546859292331945 19.797667536660075 9 27.225397514619193 14.373203573737841 18.10594726235257 40.2954516492904 10 16.479846025180432 26.566367187278768 30.840603212780138 26.11318357476067 11 37.524860887582065 21.23929223755068 21.5627787557993 19.673068119067956 12 24.73831762468201 23.207538264764324 28.305967084987188 23.74817702556648 13 29.570934354041693 19.22833315241246 24.93734631558578 26.26338617796006 14 23.72245479731356 19.05025981810373 24.757432308062622 32.46985307652009 15 25.315061898536428 26.82776490355344 21.84798871053762 26.00918448737251 16 26.13772001489539 25.717335991470552 23.067363861321883 25.07758013231218 17 24.45372122768184 25.974636467040153 24.573081806125195 24.99856049915282 18 25.178451413641035 25.057061031233008 25.350956020056785 24.413531535069172 19 25.823654066707885 24.895388405646617 24.933428985411485 24.347528542234013 20 26.000893910224793 24.33767340749233 24.655733650622693 25.005699031660182 21 26.597397571255293 24.184558167633412 24.48949636349048 24.72854789762081 22 26.11391407359861 24.05873163456501 24.756393979582686 25.070960312253693 23 24.845407048362507 24.115178946474167 25.240160657733895 25.799253347429428 24 25.11153913863891 24.557395046071694 25.028094222902702 25.30297159238669 25 25.27220827815226 24.24020026600188 25.003893746501525 25.483697709344334 26 25.06834147326848 24.938454916338333 25.15315475190346 24.84004885848973 27 25.54721374905075 24.564949907470293 24.66477155002952 25.223064793449435 28 25.123279886877015 24.514054473474054 25.152778328415355 25.209887311233576 29 25.014206261704825 24.754198634688578 25.143384129764996 25.0882109738416 30 25.05627104116883 24.77610756842554 25.162984250716104 25.004637139689528 31 25.52228070440404 24.492633510541893 24.62572871986951 25.359357065184557 32 25.33130008202857 24.532158691771752 24.465563575917017 25.670977650282662 33 24.90137026774332 24.411371999869736 24.97400630456257 25.713251427824368 34 25.587687945217247 24.433385612117224 24.958832227581205 25.020094215084328 35 25.799515193620493 24.36737298374917 25.067161164139428 24.765950658490908 36 24.91118739165381 24.81575542987568 24.81655777574622 25.45649940272429 37 25.779291667590954 24.544696380084304 24.7105488091805 24.96546314314424 38 25.16160182141866 24.38035329631846 25.02435354551753 25.433691336745344 39 25.70285730467533 24.330605348360848 24.58329793560445 25.383239411359366 40 25.77356761203462 24.555417793293994 24.811932487786645 24.859082106884742 41 25.007799362175003 24.83552903274222 25.15198726804272 25.004684337040057 42 25.876009891115604 24.719293103358762 24.731045765053437 24.673651240472203 43 25.59398872413785 24.095134482001807 24.92951996167434 25.381356832186004 44 25.1227651179036 24.601685955406197 24.703258632733586 25.572290293956613 45 25.210018591229417 24.81997563647468 24.78099022013545 25.18901555216046 46 25.184472672935165 24.6724235418942 24.76587522218373 25.377228562986904 47 25.297189636415553 24.625666366963774 24.988330466096993 25.08881353052368 48 25.845577875856833 25.055234367883312 24.229066988751118 24.87012076750874 49 25.28430249955869 25.020177524456106 24.3157341267781 25.379785849207103 50 25.30830605709485 25.1559052368018 24.50070914286928 25.03507956323407 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 205.0 1 135.5 2 66.0 3 171.5 4 277.0 5 303.5 6 330.0 7 258.0 8 186.0 9 260.5 10 335.0 11 581.5 12 828.0 13 1614.5 14 2401.0 15 3047.5 16 3694.0 17 3587.5 18 3481.0 19 3301.5 20 3122.0 21 3723.0 22 4324.0 23 5352.0 24 6380.0 25 8216.0 26 10052.0 27 12875.5 28 15699.0 29 18571.5 30 21444.0 31 25091.0 32 28738.0 33 33555.5 34 38373.0 35 45080.0 36 51787.0 37 60562.5 38 69338.0 39 78341.0 40 87344.0 41 96148.0 42 104952.0 43 110559.5 44 116167.0 45 126824.5 46 137482.0 47 146934.5 48 156387.0 49 162722.5 50 169058.0 51 167644.5 52 166231.0 53 165355.5 54 164480.0 55 164326.0 56 164172.0 57 158147.0 58 152122.0 59 140055.5 60 127989.0 61 112427.5 62 96866.0 63 83325.0 64 69784.0 65 58614.5 66 47445.0 67 40441.5 68 33438.0 69 29294.5 70 25151.0 71 19710.0 72 14269.0 73 12187.5 74 10106.0 75 7511.0 76 4916.0 77 4288.5 78 3661.0 79 3078.0 80 2495.0 81 1946.0 82 1397.0 83 1174.5 84 952.0 85 736.0 86 520.0 87 357.0 88 194.0 89 126.5 90 59.0 91 44.0 92 29.0 93 26.0 94 23.0 95 20.0 96 17.0 97 16.0 98 15.0 99 12.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.031149854398029062 2 0.005569216392374893 3 9.439349817584566E-5 4 0.0 5 4.719674908792283E-5 6 9.439349817584566E-5 7 0.0 8 0.0 9 0.0 10 9.439349817584566E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 6.135577381429966E-4 17 0.0 18 2.8318049452753693E-4 19 0.0 20 4.247707417913054E-4 21 0.0 22 0.0 23 0.0 24 0.0012743122253739162 25 3.7757399270338263E-4 26 8.495414835826108E-4 27 5.191642399671511E-4 28 0.001604689468989376 29 2.8318049452753693E-4 30 0.0012743122253739162 31 2.8318049452753693E-4 32 7.551479854067653E-4 33 3.3037724361545975E-4 34 9.911317308463792E-4 35 2.8318049452753693E-4 36 1.4159024726376847E-4 37 0.0018406732144289903 38 9.439349817584566E-5 39 4.719674908792282E-4 40 1.4159024726376847E-4 41 0.0012743122253739162 42 0.005710806639638661 43 0.004955658654231896 44 0.005191642399671511 45 0.0023126407053082184 46 0.0022654439562202955 47 0.0011799187271980705 48 0.004294904167000977 49 0.004530887912440591 50 0.0016518862180772986 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2118790.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.08983298014065 #Duplication Level Percentage of deduplicated Percentage of total 1 74.36292396283457 40.22278137064621 2 14.85906067806669 16.074482206368057 3 4.772217325612254 7.743853142619009 4 2.0334696835594346 4.399601422156372 5 1.0939618248107068 2.958610619533051 6 0.6562654972166542 2.129837468104667 7 0.42095408841136006 1.5938535434134478 8 0.296972555958058 1.2850556761165466 9 0.22268509014094387 1.0840499399602097 >10 1.1555411931303639 11.134921776611703 >50 0.06971648557242138 2.556277782540086 >100 0.04876594549175052 5.384564808362996 >500 0.005357715539812796 1.949912556745842 >1k 0.0021079536550082916 1.482197686821778 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.439349817584564E-5 2 0.0 0.0 0.0 0.0 9.439349817584564E-5 3 0.0 0.0 0.0 0.0 9.439349817584564E-5 4 0.0 0.0 0.0 0.0 9.439349817584564E-5 5 0.0 0.0 0.0 0.0 9.439349817584564E-5 6 0.0 0.0 0.0 0.0 1.4159024726376847E-4 7 0.0 0.0 0.0 0.0 1.4159024726376847E-4 8 0.0 0.0 0.0 0.0 1.4159024726376847E-4 9 0.0 0.0 0.0 0.0 1.4159024726376847E-4 10 0.0 0.0 0.0 0.0 2.359837454396141E-4 11 0.0 0.0 0.0 0.0 3.3037724361545975E-4 12 0.0 0.0 0.0 0.0 3.775739927033826E-4 13 0.0 0.0 0.0 0.0 3.775739927033826E-4 14 0.0 0.0 0.0 0.0 3.775739927033826E-4 15 0.0 0.0 0.0 0.0 7.079512363188424E-4 16 0.0 0.0 0.0 2.359837454396141E-4 7.079512363188424E-4 17 0.0 0.0 0.0 2.359837454396141E-4 7.079512363188424E-4 18 0.0 0.0 0.0 2.359837454396141E-4 8.495414835826108E-4 19 0.0 0.0 0.0 2.8318049452753693E-4 8.495414835826108E-4 20 0.0 0.0 0.0 4.719674908792282E-4 8.495414835826108E-4 21 0.0 0.0 0.0 7.079512363188424E-4 8.495414835826108E-4 22 0.0 0.0 0.0 8.967382326705337E-4 8.495414835826108E-4 23 0.0 0.0 0.0 0.0012743122253739162 8.495414835826108E-4 24 0.0 0.0 0.0 0.0014630992217256075 8.967382326705337E-4 25 0.0 0.0 0.0 0.0017462797162531446 8.967382326705337E-4 26 0.0 0.0 0.0 0.00217105045804445 9.439349817584564E-4 27 0.0 0.0 0.0 0.002690214698011601 0.001085525229022225 28 0.0 0.0 0.0 0.003398165934330443 0.001085525229022225 29 0.0 0.0 0.0 0.004483691163352668 0.001085525229022225 30 0.0 0.0 0.0 0.006560348123221272 0.001085525229022225 31 0.0 0.0 0.0 0.010147301053903407 0.001085525229022225 32 0.0 0.0 0.0 0.014111827977288924 0.0011327219781101477 33 0.0 0.0 0.0 0.017745977657058983 0.0011327219781101477 34 0.0 0.0 0.0 0.022748833060378802 0.0012271154762859935 35 0.0 0.0 0.0 0.02855403319819331 0.0012271154762859935 36 0.0 0.0 0.0 0.03501998782323874 0.0012271154762859935 37 0.0 0.0 0.0 0.04606402710981267 0.0012271154762859935 38 0.0 0.0 0.0 0.060034264839837835 0.0012271154762859935 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2245 0.0 25.387655 1 GGTATCA 1020 0.0 24.59483 1 TAGACCG 75 2.0661828E-6 23.465761 5 GTATACG 80 8.9741356E-5 19.255165 1 ATAGACG 125 4.8587026E-7 17.599321 3 TCAACGC 3265 0.0 17.181572 4 CGTCTTA 130 7.326162E-7 16.922424 15 CAACGCA 3355 0.0 16.91738 5 GTCCTAA 290 0.0 16.694134 1 ATCAACG 3375 0.0 16.686762 3 GTATAGT 225 1.8189894E-12 16.626682 1 CGTCGTA 470 0.0 16.382345 10 AACGCAG 3485 0.0 16.286314 6 GTTATAG 300 0.0 16.137661 1 ATACGCG 125 9.439789E-6 15.841256 39 TATCAAC 3565 0.0 15.797426 2 TAGGACG 195 8.931238E-10 15.794262 4 ACGGACC 655 0.0 15.78565 8 ATACCGT 530 0.0 15.357897 6 GAGCGAA 675 0.0 15.317927 16 >>END_MODULE