##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061969_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 747468 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32439515805359 32.0 32.0 32.0 32.0 32.0 2 31.55051052352743 32.0 32.0 32.0 32.0 32.0 3 31.626719806065278 32.0 32.0 32.0 32.0 32.0 4 31.69607394564048 32.0 32.0 32.0 32.0 32.0 5 31.680922795357127 32.0 32.0 32.0 32.0 32.0 6 35.32296098294509 36.0 36.0 36.0 36.0 36.0 7 35.32628286428315 36.0 36.0 36.0 36.0 36.0 8 35.2759435855448 36.0 36.0 36.0 36.0 36.0 9 35.3642711126095 36.0 36.0 36.0 36.0 36.0 10 35.267602091326985 36.0 36.0 36.0 36.0 36.0 11 35.36621768423531 36.0 36.0 36.0 36.0 36.0 12 35.30538297291657 36.0 36.0 36.0 36.0 36.0 13 35.33419892222811 36.0 36.0 36.0 36.0 36.0 14 35.300721903813944 36.0 36.0 36.0 36.0 36.0 15 35.28999234749849 36.0 36.0 36.0 36.0 36.0 16 35.30360898392975 36.0 36.0 36.0 36.0 36.0 17 35.28977160226257 36.0 36.0 36.0 36.0 36.0 18 35.294124965884826 36.0 36.0 36.0 36.0 36.0 19 35.24724001562609 36.0 36.0 36.0 36.0 36.0 20 35.261328913077215 36.0 36.0 36.0 36.0 36.0 21 35.23207816254342 36.0 36.0 36.0 36.0 36.0 22 35.191826272161485 36.0 36.0 36.0 36.0 36.0 23 35.20630314608786 36.0 36.0 36.0 36.0 36.0 24 35.1728542225219 36.0 36.0 36.0 36.0 36.0 25 35.151254635649956 36.0 36.0 36.0 36.0 36.0 26 35.11517683700172 36.0 36.0 36.0 36.0 36.0 27 35.07670562485618 36.0 36.0 36.0 36.0 36.0 28 35.04747226637127 36.0 36.0 36.0 36.0 36.0 29 35.018549289066556 36.0 36.0 36.0 36.0 36.0 30 34.981664766919785 36.0 36.0 36.0 36.0 36.0 31 34.98965440661005 36.0 36.0 36.0 36.0 36.0 32 34.96036084487898 36.0 36.0 36.0 36.0 36.0 33 34.988716573819886 36.0 36.0 36.0 36.0 36.0 34 34.95000187298988 36.0 36.0 36.0 36.0 36.0 35 34.93880540705422 36.0 36.0 36.0 36.0 36.0 36 34.89180138815307 36.0 36.0 36.0 36.0 36.0 37 34.834684561747125 36.0 36.0 36.0 36.0 36.0 38 34.827395955412136 36.0 36.0 36.0 36.0 36.0 39 34.692111234193305 36.0 36.0 36.0 32.0 36.0 40 34.74453488309867 36.0 36.0 36.0 32.0 36.0 41 34.7419608598629 36.0 36.0 36.0 32.0 36.0 42 34.72741441774096 36.0 36.0 36.0 32.0 36.0 43 34.741841791220494 36.0 36.0 36.0 32.0 36.0 44 34.629432965692175 36.0 36.0 36.0 32.0 36.0 45 34.63438568607619 36.0 36.0 36.0 32.0 36.0 46 34.51804491964874 36.0 36.0 36.0 32.0 36.0 47 34.55423242198997 36.0 36.0 36.0 32.0 36.0 48 34.520156046814044 36.0 36.0 36.0 32.0 36.0 49 34.454755253736614 36.0 36.0 36.0 32.0 36.0 50 34.0933511534942 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 6.0 21 15.0 22 38.0 23 99.0 24 293.0 25 735.0 26 1754.0 27 3231.0 28 5963.0 29 9439.0 30 14145.0 31 20653.0 32 30850.0 33 51315.0 34 115742.0 35 493189.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.39990792993575 23.211692898159537 13.519043648972174 24.869355522932537 2 13.091671940243794 22.782120767369022 42.49415000862949 21.632057283757693 3 16.30350584977223 28.527222010395135 30.939642658853593 24.229629480979042 4 10.502389399947557 19.177008246506873 41.35561656151167 28.964985792033904 5 11.14188165914795 39.950205226176905 36.69789208367448 12.210021031000657 6 27.63831398351229 41.69326765364578 19.14053615816639 11.52788220467553 7 25.959372173792055 32.767556604429885 24.338700787190888 16.93437043458717 8 23.251697731541686 38.87149683999851 21.302182835920735 16.57462259253908 9 25.24455896439714 16.068781539811738 22.88793633974966 35.79872315604146 10 15.006950139604825 28.78454834795382 34.68514329060681 21.523358221834542 11 31.287359458866465 24.70299731894877 26.96436502967351 17.04527819251125 12 22.12736866327388 27.423648905371202 31.938892367298667 18.510090064056254 13 26.650639224689215 23.84289360882339 27.81109024065244 21.695376925834953 14 19.959784231565767 23.924903808591136 28.600956830258955 27.514355129584146 15 22.22008166235879 33.603177661117265 23.016236146564133 21.160504529959812 16 21.177263860905306 29.214327952457786 28.895114400464507 20.713293786172407 17 18.6109639476205 31.18220445557536 29.197771677182168 21.00905991962198 18 19.104146543120358 29.6305116219333 31.668597635210165 19.596744199736175 19 22.353866653823307 27.809083465780475 28.653801901887437 21.183247978508778 20 22.456793790185987 29.452734720962404 28.584195584524696 19.50627590432691 21 21.82354294765796 28.128294455414814 27.39903246694173 22.649130129985497 22 21.893512498193903 30.11781106348365 27.99076348418929 19.997912954133152 23 20.529763226688573 30.592428284363436 28.957036172882777 19.920772316065214 24 22.10923170162297 28.837244149161755 29.195793202819694 19.85773094639558 25 21.13000911081886 29.35115182958889 29.48895129257234 20.029887767019904 26 19.622591024328898 30.14990668459393 30.420287237529514 19.807215053547658 27 19.960426187749512 30.85526527030064 28.58304881572892 20.601259726220928 28 19.60770935011559 29.01120601078859 29.415109384365103 21.96597525473071 29 20.75300048296705 28.660816655807714 28.083262984254738 22.5029198769705 30 20.28456562602431 28.88749155467553 28.887223980038932 21.940718839261226 31 22.212232862673957 28.023230612392336 29.093385349355554 20.671151175578157 32 20.12386013357308 29.829849516225703 28.84878842366641 21.197501926534805 33 19.881520011559022 30.510202443449085 29.887567093173217 19.720710451818675 34 20.74155039527146 28.997365748848438 30.734580131939992 19.52650372394011 35 20.53265156501683 30.390732446071272 28.82946159568035 20.24715439323155 36 19.834213194981444 29.1415261697522 29.94223148611442 21.082029149151936 37 21.406697143499322 28.322048342838947 27.83867346843213 22.4325810452296 38 20.577469537157445 30.484515725087896 28.749725740767495 20.18828899698716 39 21.747564762402956 28.97748784889687 28.187214617981095 21.087732770719086 40 22.346270805266318 28.11896712497007 29.485047500424766 20.049714569338846 41 22.328508529587655 27.878259217587097 29.839977416761098 19.95325483606415 42 21.059919671837246 29.965455143865544 28.874121327100454 20.100503857196756 43 19.547999015295037 30.495081826841776 29.46288090421604 20.494038253647155 44 19.601652045590466 29.789400310661634 29.257449122802328 21.351498520945576 45 19.89874962205032 30.053354453919574 29.131424810088646 20.91647111394146 46 21.32584119339086 28.54920061542578 28.366312127901534 21.758646063281827 47 22.15271330067187 29.23477455830767 28.222019463092636 20.390492677927828 48 19.97816535462568 29.841217174447042 27.83489154924301 22.345725921684263 49 21.063299471400647 28.262338333018928 29.309101514890017 21.365260680690405 50 19.694991263676425 29.929868593920162 28.49874373540044 21.876396407002975 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 3.0 2 6.0 3 29.0 4 52.0 5 56.0 6 60.0 7 54.5 8 49.0 9 75.5 10 102.0 11 138.5 12 175.0 13 435.5 14 696.0 15 865.5 16 1035.0 17 1369.0 18 1703.0 19 1902.5 20 2102.0 21 2844.0 22 3586.0 23 4490.5 24 5395.0 25 8206.5 26 11018.0 27 15735.0 28 20452.0 29 23660.0 30 26868.0 31 31028.0 32 35188.0 33 43283.0 34 51378.0 35 59719.5 36 68061.0 37 70763.0 38 73465.0 39 74551.5 40 75638.0 41 72957.5 42 70277.0 43 60858.0 44 51439.0 45 47894.0 46 44349.0 47 42794.5 48 41240.0 49 37442.5 50 33645.0 51 32615.0 52 31585.0 53 28243.0 54 24901.0 55 22366.5 56 19832.0 57 17644.5 58 15457.0 59 13506.0 60 11555.0 61 9705.5 62 7856.0 63 6457.0 64 5058.0 65 4578.0 66 4098.0 67 3328.5 68 2559.0 69 2435.5 70 2312.0 71 1847.5 72 1383.0 73 1238.0 74 1093.0 75 946.5 76 800.0 77 633.5 78 467.0 79 341.5 80 216.0 81 167.5 82 119.0 83 92.0 84 65.0 85 57.0 86 49.0 87 47.5 88 46.0 89 34.0 90 22.0 91 13.5 92 5.0 93 4.5 94 4.0 95 4.0 96 4.0 97 3.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0282286331990132 2 0.004147334735400044 3 4.0135497439355264E-4 4 0.0 5 0.0 6 2.675699829290351E-4 7 0.0 8 0.0 9 0.0 10 1.3378499146451755E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.027099487871053E-4 17 0.0 18 2.675699829290351E-4 19 0.0 20 8.027099487871053E-4 21 0.0 22 0.0 23 2.675699829290351E-4 24 0.001471634906109693 25 6.689249573225877E-4 26 4.0135497439355264E-4 27 5.351399658580702E-4 28 0.0016054198975742106 29 6.689249573225877E-4 30 0.001739204889038728 31 8.027099487871053E-4 32 0.0016054198975742106 33 0.0 34 9.364949402516228E-4 35 0.0 36 2.675699829290351E-4 37 0.0020067748719677634 38 0.0 39 6.689249573225877E-4 40 1.3378499146451755E-4 41 0.001471634906109693 42 0.004548689709793597 43 0.004816259692722632 44 0.004147334735400044 45 0.0018729898805032457 46 0.002408129846361316 47 2.675699829290351E-4 48 0.0042811197268645615 49 0.0028094848207548687 50 0.0018729898805032457 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 747468.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.25472254091324 #Duplication Level Percentage of deduplicated Percentage of total 1 59.31741125999467 14.980447632164081 2 13.609020824548743 6.8738408995497755 3 7.0008015525577685 5.304099023215232 4 4.342967462506644 4.387217530792773 5 2.9841108852231053 3.768144621881426 6 2.1246620167202614 3.2194649835292424 7 1.6276178073697374 2.8773525289440607 8 1.2187559542848285 2.4623474776439425 9 0.9789097657016012 2.224988507284589 >10 5.961897339675812 27.514008156148538 >50 0.5088946765196062 8.886216628254852 >100 0.3090474962562857 14.729455960570908 >500 0.015372860019609408 2.6101596275653582 >1k 5.300986213658417E-4 0.16225642245520924 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 1212 0.16214740965499527 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 966 0.12923630175472395 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 964 0.1289687317717949 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 908 0.12147677224978193 No Hit GTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCC 855 0.1143861677021625 No Hit GTATTGGAATTAGTGAAATTGGAGTTCCTTGTGGAAGGAAGTGGGCAAGT 833 0.11144289788994312 No Hit GGATATGAGATTGGCTTGAAACCAATTTTAGGGGGTTCGATTCCTTCCTT 809 0.10823205809479469 No Hit CATTTACACCTACTACCCAACTATCCATAAATCTAAGTATAGCCATTCCA 805 0.10769691812893663 No Hit GTATAGGGGTCCTAGGAAGATAATAGTTGTTAGGGCGTTTATTAGAATAA 753 0.10074009857278171 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 1.3378499146451755E-4 0.0 22 0.0 0.0 0.0 1.3378499146451755E-4 0.0 23 0.0 0.0 0.0 1.3378499146451755E-4 0.0 24 0.0 0.0 0.0 4.0135497439355264E-4 0.0 25 0.0 0.0 0.0 8.027099487871053E-4 0.0 26 0.0 0.0 0.0 9.364949402516228E-4 0.0 27 0.0 0.0 0.0 0.001204064923180658 0.0 28 0.0 0.0 0.0 0.001204064923180658 0.0 29 0.0 0.0 0.0 0.0018729898805032457 0.0 30 0.0 0.0 0.0 0.0030770548036839034 0.0 31 0.0 0.0 0.0 0.00602032461590329 0.0 32 0.0 0.0 0.0 0.011505509265948509 0.0 33 0.0 0.0 0.0 0.016723123933064694 0.0 34 0.0 0.0 0.0 0.022475878566038946 0.0 35 0.0 0.0 0.0 0.02983405309658741 0.0 36 0.0 0.0 0.0 0.04053685241374882 0.0 37 0.0 0.0 0.0 0.054049136551665086 0.0 38 0.0 0.0 0.0 0.07572230516891693 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACCGG 25 0.0023520095 35.20064 29 TCTAGCG 30 0.005744994 29.331905 16 TAGGACC 325 0.0 25.721825 4 GTATCAA 1055 0.0 25.654907 1 GGTATCA 505 0.0 23.965641 1 CGCGGTA 230 0.0 22.001873 43 GGGGTCC 170 0.0 21.99893 6 TATAGCG 50 0.0025802536 21.99893 5 ACGACAG 50 0.0025802536 21.99893 5 GTTATAT 135 1.1277734E-10 21.189823 1 GTCCTAC 1285 0.0 21.062979 1 AACGGCC 280 0.0 20.428944 37 GGGTCCT 205 0.0 20.389252 7 AGGACCT 705 0.0 20.282701 5 CGGCCGC 250 0.0 20.241722 39 TTAGGAC 910 0.0 20.067644 3 GGACCTG 715 0.0 19.999027 6 TCCTACA 1405 0.0 19.887814 2 TAACGGC 280 0.0 19.643215 36 GTCTAAA 90 9.992302E-6 19.559837 1 >>END_MODULE