SRR4061967_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR4061967_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	67592
Sequences flagged as poor quality	0
Sequence length	50
%GC	50

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	210	0.3106876553438277	No Hit
CTAATAAACAGCATGATGAAGAAACGTTTCGCATCGAGAAAAATTGATCC	123	0.18197419812995622	No Hit
ATACTAGAGTCCGCAAAAAGGACCTAATAATCTCATTTGGTTCCCTCGTA	101	0.14942596757012663	No Hit
GTACTGGTCGTAGCGGTCGACGAACTGGTCCTCGAGCTCACCGATCTCGT	101	0.14942596757012663	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	100	0.14794650254467984	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	96	0.14202864244289265	No Hit
ATGCTACCCTCACCTTTCGGGCTGGCTTGAATGATGCCCTTGAAGCTCTT	93	0.13759024736655226	No Hit
CTATAACCCTGCTGATACCCGCTACTTTGCCCGTACCCGGGAGCGTCGTT	86	0.12723399218842465	No Hit
ATCCTGGATGATGGCCTTGGAAGCCTCGTATCCGTCGTAGGCGTTGCGGG	84	0.12427506213753108	No Hit
GTCCTGGTCCTGACCAGAGAGGTCGTGGCCAGATGTTTGGTTGCGACGGC	84	0.12427506213753108	No Hit
GATCAAGGCAGTTCTGAGAGCGGGAGTGCTTGCCAGGCGGCATGTCTCAG	83	0.12279559711208428	No Hit
CCTCATAACCACCGCAAACCGCCAAAATGCTCGCCGCCCGCACCGCCACC	82	0.12131613208663747	No Hit
CACATACTCCATGCGCCAGTCGCGCGCGCCGACTGCCTCGCAGATCCAGA	81	0.11983666706119067	No Hit
GAATAAGCTAAGCCACCCTTCATTGATCAGGCTTTTCATTAATCTAGAAA	81	0.11983666706119067	No Hit
GTCTCATATCGCGCTTAAAATGGGTTGTCCTCTGGAGCAACCTCCTTGTT	80	0.11835720203574387	No Hit
ACCAAGCACTGTACGACTCTCTGCACGCCAAAGACCACACCTCATAACCA	79	0.11687773701029708	No Hit
GGGCTACAGCGGCGGACATGAGCAGCAGGTTTACGGAGCAGGAGGCTACC	76	0.11243934193395667	No Hit
CACATACACAGCAAAATACCTATCACACCGCAATCATGGACATGATCGGC	74	0.1094804118830631	No Hit
GTACATGGGGAGCTGTGAATGAGTTGGTTGTTCGAGAGGGAAGGCATTTT	73	0.1080009468576163	No Hit
GTGAATGAGTTGGTTGTTCGAGAGGGAAGGCATTTTCTTATAATGGCGTT	72	0.10652148183216947	No Hit
CTCTAAGACAAGAGAACCAACCCAATGCAAAACGCCATATGCTCGCAGAA	70	0.1035625517812759	No Hit
TTTTTATAGTGGGTGTTTCAGCTCCATCCGCGAGGGACCTCACCTACATA	69	0.1020830867558291	No Hit
GTCCACCGACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCT	69	0.1020830867558291	No Hit
GGGTAGCATCGTGCACTGGACTTTGGAGTATGAAAAGTTGCACAACCAAA	69	0.1020830867558291	No Hit
CTCCCAGAGCGCCCATGCTCCCCAGTAAAACTCCGAAATGCTCCCTCTAA	68	0.1006036217303823	No Hit
ATCATGGACATGATCGGCAAGGTCGCTAAATCGCTGCTCGACAAGAACGG	68	0.1006036217303823	No Hit
ATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGA	68	0.1006036217303823	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCTCG	20	7.803912E-4	44.0	35
CGGGAAA	20	7.803912E-4	44.0	40
ACCTCGG	20	7.803912E-4	44.0	36
GGGAAAA	20	7.803912E-4	44.0	41
AAGCATA	20	7.803912E-4	44.0	33
TCAAGGC	35	7.1889644E-6	37.714287	3
GCAGTTC	35	7.1889644E-6	37.714287	8
CAAGGCA	35	7.1889644E-6	37.714287	4
ATCAAGG	35	7.1889644E-6	37.714287	2
GTGCTTG	35	7.1889644E-6	37.714287	26
TGAGAGC	35	7.1889644E-6	37.714287	15
GCGGGAG	30	1.2881715E-4	36.666664	20
GGGAGTG	30	1.2881715E-4	36.666664	22
AGCGGGA	30	1.2881715E-4	36.666664	19
CGGGAGT	30	1.2881715E-4	36.666664	21
GAAAAGG	25	0.0023371524	35.2	43
AATGACA	25	0.0023371524	35.2	26
GTCTCAG	40	1.79489E-5	33.0	44
AAGGCAG	40	1.79489E-5	33.0	5
GCTTGCC	40	1.79489E-5	33.0	28

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content