##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061962_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3482755 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.313479702132362 32.0 32.0 32.0 32.0 32.0 2 31.564783626755254 32.0 32.0 32.0 32.0 32.0 3 31.634918907588965 32.0 32.0 32.0 32.0 32.0 4 31.692785740024778 32.0 32.0 32.0 32.0 32.0 5 31.683809512871274 32.0 32.0 32.0 32.0 32.0 6 35.34492521007076 36.0 36.0 36.0 36.0 36.0 7 35.34970188830394 36.0 36.0 36.0 36.0 36.0 8 35.31218561167811 36.0 36.0 36.0 36.0 36.0 9 35.36534094416633 36.0 36.0 36.0 36.0 36.0 10 35.27952325098952 36.0 36.0 36.0 36.0 36.0 11 35.369298156201054 36.0 36.0 36.0 36.0 36.0 12 35.318299736846264 36.0 36.0 36.0 36.0 36.0 13 35.33110339372135 36.0 36.0 36.0 36.0 36.0 14 35.30030852012272 36.0 36.0 36.0 36.0 36.0 15 35.29144657031574 36.0 36.0 36.0 36.0 36.0 16 35.30408397949325 36.0 36.0 36.0 36.0 36.0 17 35.2885847554594 36.0 36.0 36.0 36.0 36.0 18 35.2815704808406 36.0 36.0 36.0 36.0 36.0 19 35.27362102703176 36.0 36.0 36.0 36.0 36.0 20 35.27173860923321 36.0 36.0 36.0 36.0 36.0 21 35.26747445628533 36.0 36.0 36.0 36.0 36.0 22 35.24817364414092 36.0 36.0 36.0 36.0 36.0 23 35.22107325953161 36.0 36.0 36.0 36.0 36.0 24 35.20909911837037 36.0 36.0 36.0 36.0 36.0 25 35.20348029074684 36.0 36.0 36.0 36.0 36.0 26 35.16403508142261 36.0 36.0 36.0 36.0 36.0 27 35.148415550333 36.0 36.0 36.0 36.0 36.0 28 35.13696168694037 36.0 36.0 36.0 36.0 36.0 29 35.12536512042909 36.0 36.0 36.0 36.0 36.0 30 35.10726048774605 36.0 36.0 36.0 36.0 36.0 31 35.10281171084386 36.0 36.0 36.0 36.0 36.0 32 35.08201868922735 36.0 36.0 36.0 36.0 36.0 33 35.060342745900876 36.0 36.0 36.0 36.0 36.0 34 35.05555687953933 36.0 36.0 36.0 36.0 36.0 35 35.04302714374109 36.0 36.0 36.0 36.0 36.0 36 35.02296888526468 36.0 36.0 36.0 36.0 36.0 37 35.012148141342124 36.0 36.0 36.0 36.0 36.0 38 35.009454009828424 36.0 36.0 36.0 36.0 36.0 39 34.990260871063285 36.0 36.0 36.0 36.0 36.0 40 34.97698172854536 36.0 36.0 36.0 36.0 36.0 41 34.95151998920395 36.0 36.0 36.0 36.0 36.0 42 34.93728987540037 36.0 36.0 36.0 36.0 36.0 43 34.920074768394564 36.0 36.0 36.0 36.0 36.0 44 34.893359136660486 36.0 36.0 36.0 36.0 36.0 45 34.873980512554 36.0 36.0 36.0 36.0 36.0 46 34.85123903346632 36.0 36.0 36.0 36.0 36.0 47 34.82370709395292 36.0 36.0 36.0 36.0 36.0 48 34.81265377553115 36.0 36.0 36.0 36.0 36.0 49 34.79546967845857 36.0 36.0 36.0 36.0 36.0 50 34.410249070060914 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 7.0 20 24.0 21 87.0 22 221.0 23 584.0 24 1594.0 25 3748.0 26 7807.0 27 14512.0 28 24666.0 29 39066.0 30 57786.0 31 84308.0 32 124898.0 33 206509.0 34 475691.0 35 2441245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.03338443978122 17.486619742177638 12.54782971844732 25.93216609959381 2 15.98321938557223 19.98110601592493 37.78592943757376 26.249745160929077 3 18.551532097410604 24.278226753517774 28.45562490704164 28.71461624202999 4 13.195878893542295 15.86827550840513 34.295732629981906 36.64011296807067 5 14.517140468227424 37.23009849682091 32.57323518872432 15.679525846227351 6 34.303161930269965 34.35941064895344 16.99133384978405 14.346093570992544 7 30.844460778894867 30.749823056746745 19.70744425031333 18.69827191404506 8 29.15169169235275 32.596636857889806 18.667319406619185 19.58435204313826 9 28.51059003576192 14.656787514482069 17.860601736269132 38.972020713486884 10 16.964476962771418 27.628910913604578 30.670584256022675 24.73602786760133 11 36.82050560547612 21.807850394299916 21.532005553075077 19.83963844714888 12 25.172944981774485 23.994768509412808 28.101747036469693 22.73053947234302 13 30.127470924598487 20.311879532151988 24.74937226419889 24.811277279050636 14 24.164576606738056 19.2360358394432 25.18109944569744 31.4182881081213 15 25.593273141521582 26.76943971080366 22.516714497574476 25.120572650100282 16 25.678764278326803 26.300719608720296 22.762370625768437 25.258145487184464 17 24.172616219056465 26.152428178266916 24.709978163838684 24.96497743883793 18 24.641389706410163 26.041576340535492 25.335812217356974 23.981221735697368 19 26.152514316970333 24.949013065805662 25.38863629511694 23.509836322107066 20 27.03370473577595 24.453039197529534 24.78191771146036 23.73133835523416 21 26.951810823219446 24.467569190235423 24.467971171082187 24.11264881546294 22 27.03982910081243 24.175745925280417 24.47763336783667 24.306791606070483 23 26.133550096719464 24.244010413600964 24.752631036424347 24.869808453255228 24 25.217767821328312 24.718790440698267 24.871113780797383 25.192327957176037 25 25.55306167627928 24.488586458570513 25.01498098197717 24.94337088317303 26 25.16573157915894 24.885837013386013 24.912080718055325 25.03635068939973 27 25.225390260591023 25.414006282989497 24.4841054607339 24.876497995685575 28 25.73271561247827 24.78356560077756 24.692687703057544 24.791031083686626 29 25.32323053373918 25.19772557800186 24.613873422897147 24.86517046536181 30 25.617765695239804 24.96293118696005 24.574814110382942 24.84448900741721 31 25.341786472106655 24.734676532490315 24.896733309788583 25.026803685614446 32 25.470342366575178 25.009123592447185 24.860274801743117 24.66025923923452 33 25.59041055534914 24.776885825150615 24.688478574090674 24.94422504540957 34 25.250543467493454 24.682540616855345 25.126617661035354 24.940298254615847 35 25.140614578090226 24.83476405262857 24.99170913075225 25.032912238528954 36 25.453894453460315 24.932093852325806 24.92577700137937 24.68823469283451 37 25.707380578561278 24.500532344371102 24.988974097168065 24.80311297989955 38 25.805784732427266 24.94660834500513 24.53690384104074 24.710703081526862 39 25.413433921350574 25.010788977928467 24.65351086119158 24.922266239529378 40 25.362500689110224 24.965774192362822 24.45066430225293 25.221060816274026 41 25.19043310700634 25.050370127477983 24.676380724370812 25.082816041144863 42 25.12230132369988 24.76024288840451 24.841073604191365 25.27638218370424 43 25.3332123514119 24.50662060165152 24.97529154824508 25.1848754986915 44 25.188644057041014 24.522507068678525 24.900958101335863 25.387890772944598 45 25.213528945928203 24.653670492662805 24.825320602090468 25.307479959318524 46 25.509305759182148 24.379630411274988 24.653758224265093 25.457305605277767 47 25.060132752904273 24.938359800741434 24.97677814782794 25.02472929852635 48 25.08950899196034 24.943009713114673 24.679041098761818 25.288440196163165 49 25.252288289602404 24.685244426399297 24.656932432824338 25.405534851173954 50 25.01027936913387 25.054239464508036 24.690814952979064 25.24466621337903 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 137.0 1 174.5 2 212.0 3 460.5 4 709.0 5 835.0 6 961.0 7 860.5 8 760.0 9 992.0 10 1224.0 11 1739.0 12 2254.0 13 3691.0 14 5128.0 15 6404.0 16 7680.0 17 6852.5 18 6025.0 19 5169.5 20 4314.0 21 4686.0 22 5058.0 23 6035.0 24 7012.0 25 8483.0 26 9954.0 27 13221.5 28 16489.0 29 20382.0 30 24275.0 31 30878.0 32 37481.0 33 46003.5 34 54526.0 35 67390.0 36 80254.0 37 90451.5 38 100649.0 39 119500.5 40 138352.0 41 160201.5 42 182051.0 43 199147.0 44 216243.0 45 234740.0 46 253237.0 47 267583.0 48 281929.0 49 288684.0 50 295439.0 51 303792.0 52 312145.0 53 308594.5 54 305044.0 55 293059.5 56 281075.0 57 262391.0 58 243707.0 59 219195.5 60 194684.0 61 167552.5 62 140421.0 63 121776.0 64 103131.0 65 86634.0 66 70137.0 67 57737.5 68 45338.0 69 34551.5 70 23765.0 71 18196.5 72 12628.0 73 10363.5 74 8099.0 75 6427.0 76 4755.0 77 3695.0 78 2635.0 79 2059.5 80 1484.0 81 1096.5 82 709.0 83 524.5 84 340.0 85 262.5 86 185.0 87 120.0 88 55.0 89 38.5 90 22.0 91 16.5 92 11.0 93 12.5 94 14.0 95 11.0 96 8.0 97 8.5 98 9.0 99 5.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.032531716988418655 2 0.004737628687633784 3 3.7326771478326783E-4 4 2.8712901137174452E-5 5 8.613870341152336E-5 6 2.5841611023457003E-4 7 0.0 8 0.0 9 0.0 10 2.8712901137174452E-5 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 8.326741329780591E-4 17 0.0 18 1.4356450568587224E-4 19 0.0 20 2.871290113717445E-4 21 5.7425802274348903E-5 22 0.0 23 5.7425802274348903E-5 24 9.188128363895825E-4 25 1.7227740682304672E-4 26 4.306935170576168E-4 27 5.168322204691401E-4 28 0.0017227740682304671 29 6.891096272921869E-4 30 0.0012346547488985013 31 7.178225284293612E-4 32 7.465354295665357E-4 33 2.5841611023457003E-4 34 7.465354295665357E-4 35 2.2970320909739561E-4 36 2.0099030796022114E-4 37 0.0013495063534471991 38 2.8712901137174452E-5 39 9.762386386639314E-4 40 8.613870341152336E-5 41 0.0010336644409382801 42 0.004823767391045308 43 0.004048519060341598 44 0.003962380356930074 45 0.002555448201208526 46 0.002096041783013735 47 0.0012633676500356757 48 0.0041346577637531206 49 0.003790102950107028 50 0.001464357957995897 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3482755.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.302447349324506 #Duplication Level Percentage of deduplicated Percentage of total 1 58.551874371118515 12.47298220995015 2 11.370542749258139 4.8444077649862995 3 6.087269401477086 3.890212077783592 4 3.9110682101298164 3.3326129850362896 5 2.7725331603284604 2.953087083607665 6 2.191777807139773 2.8014138802807755 7 1.7403169849544147 2.595110766018861 8 1.4452166540048934 2.4629321344244937 9 1.189678396491709 2.2808755263504086 >10 9.664546937897466 40.65079188834374 >50 0.8064355285449529 11.68771786292945 >100 0.263858094749002 9.249069486432825 >500 0.004203689474418094 0.5424061940275233 >1k 6.780144313259917E-4 0.23638013982796402 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.74258022743489E-5 2 0.0 0.0 0.0 0.0 5.74258022743489E-5 3 0.0 0.0 0.0 0.0 5.74258022743489E-5 4 0.0 0.0 0.0 0.0 8.613870341152334E-5 5 0.0 0.0 0.0 0.0 8.613870341152334E-5 6 0.0 0.0 0.0 0.0 3.445548136460934E-4 7 0.0 0.0 0.0 0.0 3.445548136460934E-4 8 0.0 0.0 0.0 0.0 4.881193193319656E-4 9 0.0 0.0 0.0 0.0 6.891096272921868E-4 10 0.0 0.0 0.0 0.0 6.891096272921868E-4 11 0.0 0.0 0.0 0.0 6.891096272921868E-4 12 0.0 0.0 0.0 0.0 6.891096272921868E-4 13 0.0 0.0 0.0 0.0 6.891096272921868E-4 14 0.0 0.0 0.0 0.0 8.326741329780591E-4 15 0.0 0.0 0.0 2.871290113717445E-5 0.0010910902432126291 16 0.0 0.0 0.0 2.0099030796022114E-4 0.0012920805511728503 17 0.0 0.0 0.0 2.0099030796022114E-4 0.0013207934523100247 18 0.0 0.0 0.0 3.1584191250891893E-4 0.001464357957995897 19 0.0 0.0 0.0 4.019806159204423E-4 0.001464357957995897 20 0.0 0.0 0.0 6.029709238806635E-4 0.0014930708591330713 21 0.0 0.0 0.0 8.90099935252408E-4 0.0016366353648189437 22 0.0 0.0 0.0 0.0012920805511728503 0.0016366353648189437 23 0.0 0.0 0.0 0.001722774068230467 0.0018950514750535137 24 0.0 0.0 0.0 0.002555448201208526 0.0020099030796022115 25 0.0 0.0 0.0 0.003388122334186585 0.002038615980739386 26 0.0 0.0 0.0 0.004163370664890295 0.0022108933875624325 27 0.0 0.0 0.0 0.005857431831983588 0.002239606288699607 28 0.0 0.0 0.0 0.007063373679744914 0.002239606288699607 29 0.0 0.0 0.0 0.009073276759347127 0.0022683191898367817 30 0.0 0.0 0.0 0.011887141070790221 0.0022683191898367817 31 0.0 0.0 0.0 0.020414872708531033 0.0023257449921111305 32 0.0 0.0 0.0 0.029660426874701207 0.0026702998057572236 33 0.0 0.0 0.0 0.03950895196475204 0.0026990127068943983 34 0.0 0.0 0.0 0.05148223173895379 0.002928715915991794 35 0.0 0.0 0.0 0.06268026318245182 0.002928715915991794 36 0.0 0.0 0.0 0.08025255867840259 0.003043567520540492 37 0.0 0.0 0.0 0.10841991469397072 0.003043567520540492 38 0.0 0.0 0.0 0.14428232821430162 0.003129706223952015 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6710 0.0 31.384083 1 GGTATCA 2225 0.0 30.658558 1 TGCGATA 70 1.1332068E-6 25.14308 24 TATCAAC 9800 0.0 21.460182 2 TCGACGT 75 5.476055E-5 20.533514 35 GTCGACG 55 0.0044850474 20.000177 34 ATCAACG 10750 0.0 19.604347 3 TCAACGC 10835 0.0 19.430248 4 CAACGCA 11020 0.0 19.143986 5 CCCTATA 115 2.0251537E-7 19.129503 2 AACGCAG 11365 0.0 18.562843 6 TTAGTCG 185 4.2200554E-10 16.650469 39 TATAGCG 80 0.0019902 16.49896 5 CGGTAAG 215 1.2732926E-11 16.371061 16 CCTATAC 215 1.2732926E-11 16.371061 3 GCGATTT 325 0.0 16.24793 39 TACCGTA 190 6.184564E-10 16.209505 7 TAACGCC 85 0.0029826981 15.528434 4 TATACCG 170 4.501453E-8 15.528434 5 ACGCAGA 13630 0.0 15.478116 7 >>END_MODULE