##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061961_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5831840 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.280599090510027 32.0 32.0 32.0 32.0 32.0 2 31.437881697714616 32.0 32.0 32.0 32.0 32.0 3 31.560318527257262 32.0 32.0 32.0 32.0 32.0 4 31.643707303355374 32.0 32.0 32.0 32.0 32.0 5 31.615112383055777 32.0 32.0 32.0 32.0 32.0 6 35.25656396608961 36.0 36.0 36.0 36.0 36.0 7 35.265852629701776 36.0 36.0 36.0 36.0 36.0 8 35.21637819281736 36.0 36.0 36.0 36.0 36.0 9 35.30420210431013 36.0 36.0 36.0 36.0 36.0 10 35.183732749869684 36.0 36.0 36.0 36.0 36.0 11 35.300928694888746 36.0 36.0 36.0 36.0 36.0 12 35.23174229745672 36.0 36.0 36.0 36.0 36.0 13 35.263430924030835 36.0 36.0 36.0 36.0 36.0 14 35.23007764273368 36.0 36.0 36.0 36.0 36.0 15 35.20648285961206 36.0 36.0 36.0 36.0 36.0 16 35.22457423386101 36.0 36.0 36.0 36.0 36.0 17 35.20901756563966 36.0 36.0 36.0 36.0 36.0 18 35.199765768608195 36.0 36.0 36.0 36.0 36.0 19 35.19296774259925 36.0 36.0 36.0 36.0 36.0 20 35.193442549864194 36.0 36.0 36.0 36.0 36.0 21 35.18737499657055 36.0 36.0 36.0 36.0 36.0 22 35.16769407253971 36.0 36.0 36.0 36.0 36.0 23 35.140541235699196 36.0 36.0 36.0 36.0 36.0 24 35.13159105873961 36.0 36.0 36.0 36.0 36.0 25 35.120170649400535 36.0 36.0 36.0 36.0 36.0 26 35.0743758402151 36.0 36.0 36.0 36.0 36.0 27 35.062733202557 36.0 36.0 36.0 36.0 36.0 28 35.045177851244205 36.0 36.0 36.0 36.0 36.0 29 35.03143433290351 36.0 36.0 36.0 36.0 36.0 30 35.01281568081429 36.0 36.0 36.0 36.0 36.0 31 35.010750637877585 36.0 36.0 36.0 36.0 36.0 32 34.9856817059453 36.0 36.0 36.0 36.0 36.0 33 34.97055594803698 36.0 36.0 36.0 36.0 36.0 34 34.96425484924141 36.0 36.0 36.0 36.0 36.0 35 34.95213020247469 36.0 36.0 36.0 36.0 36.0 36 34.92568811901561 36.0 36.0 36.0 36.0 36.0 37 34.921697440258995 36.0 36.0 36.0 36.0 36.0 38 34.91263837828198 36.0 36.0 36.0 36.0 36.0 39 34.89224018491591 36.0 36.0 36.0 36.0 36.0 40 34.88191479875991 36.0 36.0 36.0 32.0 36.0 41 34.860225074762 36.0 36.0 36.0 32.0 36.0 42 34.84081370545145 36.0 36.0 36.0 32.0 36.0 43 34.82803008998875 36.0 36.0 36.0 32.0 36.0 44 34.8011903618755 36.0 36.0 36.0 32.0 36.0 45 34.78780213448928 36.0 36.0 36.0 32.0 36.0 46 34.77159970095202 36.0 36.0 36.0 32.0 36.0 47 34.747746337348076 36.0 36.0 36.0 32.0 36.0 48 34.727819864742514 36.0 36.0 36.0 32.0 36.0 49 34.71311078493237 36.0 36.0 36.0 32.0 36.0 50 34.31107111992099 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 9.0 20 29.0 21 150.0 22 374.0 23 1026.0 24 2704.0 25 6314.0 26 13449.0 27 25294.0 28 43573.0 29 69286.0 30 103976.0 31 154860.0 32 236117.0 33 400397.0 34 921082.0 35 3853198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.949281881541886 17.53997022655298 12.280629232077313 26.230118659827816 2 16.27972897127509 19.665787484958997 37.27630981698033 26.77817372678558 3 18.77120476502557 23.12359799486473 28.366827130987794 29.73837010912191 4 13.191977146149414 15.857585256111278 34.52037435869297 36.43006323904634 5 14.947274779019104 36.2915025603416 33.18797038121251 15.57325227942678 6 35.329482397374825 34.329264455456425 16.452745785241646 13.888507361927108 7 31.22570235123049 30.052179072128176 19.828699004087905 18.89341957255343 8 28.386289747318173 33.72357609262257 18.46849364865977 19.42164051139949 9 27.282212817909958 14.992386622403908 18.216840654064583 39.50855990562155 10 16.325199075351385 27.288845693046632 31.458166611995498 24.92778861960648 11 36.746189881752585 21.61844289280913 21.980198359351423 19.65516886608686 12 24.63236725156507 23.516715739237657 28.562482606258506 23.288434402938766 13 29.66729196960136 20.00613871436802 24.9330742955911 25.393495020439516 14 23.65575873137809 19.085674504101622 25.276516502510354 31.98205026200993 15 25.140350215369423 27.25695492331751 21.994070482043405 25.608624379269664 16 25.643140919052733 26.26454330037215 23.333737438931898 24.75857834164322 17 24.230448709155258 26.366018272106228 24.8880970671349 24.51543595160361 18 24.56561211435113 26.144516975555003 25.367179101849214 23.922691808244657 19 25.629081044747455 25.38925965047052 25.153570742681552 23.82808856210047 20 25.864811647960956 25.002662119657693 24.987984023509647 24.14454220887171 21 26.034052037444795 24.73254148477007 24.80858953753696 24.424816940248178 22 26.0338075118659 24.499437570303712 24.895504677768937 24.571250240061456 23 25.291168924788376 24.80790790141976 25.02530077138631 24.875622402405554 24 24.98553614352261 25.055857750415058 24.990183096818843 24.968423009243494 25 25.072481561527532 24.818033042126757 25.21176893420039 24.89771646214532 26 24.920864967341153 25.176823500926986 25.272522876283222 24.62978865544864 27 25.059895497532164 25.446275470590336 24.861758516717924 24.63207051515958 28 25.26906547407052 24.828203634615218 25.183773883660145 24.718957007654122 29 25.01496531869913 25.186661378434888 25.037239680188865 24.761133622677118 30 25.00498561929622 25.289496007474916 24.976092176427304 24.72942619680156 31 25.2094543384398 24.940738911694805 24.88427283420956 24.965533915655833 32 25.12796251439953 25.243553175648074 24.889116301592683 24.7393680083597 33 25.012461802239816 25.20221385395745 24.85057411741547 24.934750226387266 34 25.23476921583781 24.923063943821035 25.162132867930282 24.68003397241088 35 25.034877571835107 25.16091009542805 25.18952890928882 24.614683423448017 36 24.984593172297544 25.149995798917317 25.142348113713876 24.723062915071257 37 25.423210317891726 24.826115182894146 25.0429632078555 24.707711291358624 38 25.15950800425046 25.08008194327724 25.053160761125266 24.707249291347036 39 25.169767539959377 25.2516462332886 24.937403524607678 24.64118270214435 40 25.301020124708586 25.009705348367135 24.95639452138229 24.732880005541993 41 24.996754848479288 25.152162025399804 25.081720374424464 24.769362751696438 42 25.104594833277606 25.030755116564208 25.01485882827036 24.849791221887834 43 25.080411270833324 24.750929550346793 25.097696457377012 25.070962721442875 44 24.9408266520566 25.005251564966358 25.08879646134548 24.96512532163156 45 24.951373552459717 25.13768276608051 25.036700257197598 24.874243424262175 46 25.168120305496505 24.885423377489225 24.956723500421063 24.989732816593207 47 25.018763622595774 25.18490549084385 24.99083038868349 24.805500497876885 48 24.939810645319053 25.42586969330523 24.782563812719538 24.851755848656182 49 25.04595199728927 25.095697960209744 24.93145568759604 24.92689435490495 50 24.84162105278681 25.351160142400015 24.92156287462012 24.88565593019306 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 14.0 1 42.5 2 71.0 3 182.5 4 294.0 5 357.0 6 420.0 7 410.0 8 400.0 9 505.0 10 610.0 11 918.0 12 1226.0 13 2448.0 14 3670.0 15 4796.0 16 5922.0 17 5796.5 18 5671.0 19 5655.0 20 5639.0 21 6814.5 22 7990.0 23 11028.5 24 14067.0 25 18978.0 26 23889.0 27 31884.5 28 39880.0 29 49050.5 30 58221.0 31 73757.0 32 89293.0 33 107596.5 34 125900.0 35 148596.0 36 171292.0 37 190979.5 38 210667.0 39 239123.5 40 267580.0 41 292444.0 42 317308.0 43 334755.5 44 352203.0 45 376705.0 46 401207.0 47 419621.5 48 438036.0 49 448867.0 50 459698.0 51 466823.5 52 473949.0 53 471442.0 54 468935.0 55 454141.5 56 439348.0 57 415202.0 58 391056.0 59 356519.5 60 321983.0 61 280970.5 62 239958.0 63 206716.0 64 173474.0 65 145405.5 66 117337.0 67 98556.0 68 79775.0 69 64423.0 70 49071.0 71 38600.0 72 28129.0 73 23567.5 74 19006.0 75 15525.0 76 12044.0 77 9769.0 78 7494.0 79 6011.5 80 4529.0 81 3497.0 82 2465.0 83 1794.5 84 1124.0 85 848.5 86 573.0 87 380.0 88 187.0 89 131.5 90 76.0 91 59.5 92 43.0 93 37.5 94 32.0 95 33.5 96 35.0 97 35.0 98 35.0 99 24.5 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03108795851738045 2 0.0048183763614913985 3 2.4006145573266758E-4 4 0.0 5 1.7147246838047683E-5 6 1.8861971521852452E-4 7 0.0 8 0.0 9 0.0 10 5.144174051414305E-5 11 0.0 12 1.7147246838047683E-5 13 0.0 14 0.0 15 0.0 16 5.315646519794781E-4 17 0.0 18 2.2291420889461986E-4 19 0.0 20 3.6009218359900135E-4 21 1.7147246838047683E-5 22 0.0 23 3.4294493676095365E-5 24 0.0010631293039589562 25 2.057669620565722E-4 26 6.173008861697166E-4 27 2.743559494087629E-4 28 0.0013889269938818622 29 3.943866772750967E-4 30 0.0011488655381491947 31 3.4294493676095367E-4 32 9.259513292545749E-4 33 3.25797689922906E-4 34 8.402150950643365E-4 35 2.057669620565722E-4 36 1.7147246838047683E-4 37 0.0018176081648330542 38 1.7147246838047683E-5 39 7.201843671980027E-4 40 6.858898735219073E-5 41 0.001080276550797004 42 0.004972701583033828 43 0.0044068424373782545 44 0.0042010754753216825 45 0.0023491728168125326 46 0.0026235287662212956 47 0.0013203380065296717 48 0.004183928228483635 49 0.003618069082828061 50 0.0016975774369667209 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5831840.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.498891260978446 #Duplication Level Percentage of deduplicated Percentage of total 1 68.96913478244784 31.380191638303607 2 15.600123227661328 14.195766207864539 3 5.792278338423574 7.906267268197653 4 2.8413424955438615 5.171117329597892 5 1.6342430634908878 3.7178123719890097 6 1.0679027113995931 2.9153033605964485 7 0.7401550625674314 2.357336429561278 8 0.5232364935228527 1.9045344258057544 9 0.38404623753197314 1.5726310200589635 >10 2.239762201648337 18.39561973427946 >50 0.139139162803619 4.3589566765864864 >100 0.06590424474509696 5.201437708362974 >500 0.002352540910056627 0.6952967131905076 >1k 3.794373037300483E-4 0.22772911560538403 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.4294493676095365E-5 2 0.0 0.0 0.0 0.0 3.4294493676095365E-5 3 0.0 0.0 0.0 0.0 3.4294493676095365E-5 4 0.0 0.0 0.0 0.0 3.4294493676095365E-5 5 0.0 0.0 0.0 0.0 5.144174051414305E-5 6 0.0 0.0 0.0 0.0 5.144174051414305E-5 7 0.0 0.0 0.0 0.0 5.144174051414305E-5 8 0.0 0.0 0.0 0.0 5.144174051414305E-5 9 0.0 0.0 0.0 0.0 5.144174051414305E-5 10 0.0 0.0 0.0 1.7147246838047683E-5 5.144174051414305E-5 11 0.0 0.0 0.0 1.7147246838047683E-5 5.144174051414305E-5 12 0.0 0.0 0.0 1.7147246838047683E-5 2.4006145573266755E-4 13 0.0 0.0 0.0 1.7147246838047683E-5 3.25797689922906E-4 14 0.0 0.0 0.0 8.573623419023842E-5 3.25797689922906E-4 15 0.0 0.0 0.0 1.7147246838047683E-4 4.115339241131444E-4 16 1.7147246838047683E-5 0.0 0.0 3.6009218359900135E-4 4.458284177892398E-4 17 1.7147246838047683E-5 0.0 0.0 4.972701583033828E-4 4.6297566462728747E-4 18 1.7147246838047683E-5 0.0 0.0 6.344481330077642E-4 4.6297566462728747E-4 19 1.7147246838047683E-5 0.0 0.0 9.088040824165272E-4 4.6297566462728747E-4 20 1.7147246838047683E-5 0.0 0.0 0.0011145710444730994 5.658591456555736E-4 21 1.7147246838047683E-5 0.0 0.0 0.0014575159812340532 6.00153639331669E-4 22 1.7147246838047683E-5 0.0 0.0 0.0016975774369667206 6.00153639331669E-4 23 1.7147246838047683E-5 0.0 0.0 0.0022462893357842466 6.00153639331669E-4 24 1.7147246838047683E-5 0.0 0.0 0.003137946171362726 6.173008861697166E-4 25 1.7147246838047683E-5 0.0 0.0 0.004166780981645587 6.173008861697166E-4 26 1.7147246838047683E-5 0.0 0.0 0.0050927323109001615 6.858898735219073E-4 27 1.7147246838047683E-5 0.0 0.0 0.005778622184422069 7.373316140360503E-4 28 1.7147246838047683E-5 0.0 0.0 0.00680745699470493 7.373316140360503E-4 29 1.7147246838047683E-5 0.0 0.0 0.007939175286016077 7.373316140360503E-4 30 1.7147246838047683E-5 0.0 0.0 0.00961960547614475 7.373316140360503E-4 31 1.7147246838047683E-5 0.0 0.0 0.013083349337430382 7.373316140360503E-4 32 3.4294493676095365E-5 0.0 0.0 0.018416143104063212 7.373316140360503E-4 33 3.4294493676095365E-5 0.0 0.0 0.023063046997174135 7.544788608740981E-4 34 3.4294493676095365E-5 0.0 0.0 0.02906458339049082 7.887733545501934E-4 35 3.4294493676095365E-5 0.0 0.0 0.035031825290131414 7.887733545501934E-4 36 3.4294493676095365E-5 0.0 0.0 0.04298814782298554 7.887733545501934E-4 37 3.4294493676095365E-5 0.0 0.0 0.05456253943866773 8.059206013882411E-4 38 3.4294493676095365E-5 0.0 0.0 0.06989217811188235 8.230678482262888E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2380 0.0 28.388002 1 GTATCAA 6300 0.0 27.806475 1 TCAACGC 9245 0.0 18.608255 4 TATCAAC 9300 0.0 18.546312 2 GTATAGG 1045 0.0 18.322147 1 ATCAACG 9500 0.0 18.155085 3 CAACGCA 9530 0.0 18.051767 5 AACGCAG 9965 0.0 17.352062 6 TATACCG 275 0.0 15.19941 5 ATAGGGG 935 0.0 14.822954 3 TATAGGG 1110 0.0 14.666726 2 TAGGGCG 685 0.0 14.452366 31 CGCGTAA 320 0.0 14.43694 10 ACGCAGA 12105 0.0 14.284452 7 TACGCGG 110 0.0010191184 13.999457 10 AGAGTAC 12580 0.0 13.780068 11 ATACCGT 520 0.0 13.537938 6 GTACTAG 440 0.0 13.504686 1 ACCGTAT 315 1.8189894E-12 13.269326 8 GTCTTAG 925 0.0 13.085622 1 >>END_MODULE