##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061955_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2530319 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23994168324231 32.0 32.0 32.0 32.0 32.0 2 31.390303357007554 32.0 32.0 32.0 32.0 32.0 3 31.540021633635916 32.0 32.0 32.0 32.0 32.0 4 31.6247809070714 32.0 32.0 32.0 32.0 32.0 5 31.595285811788948 32.0 32.0 32.0 32.0 32.0 6 35.234194581789886 36.0 36.0 36.0 36.0 36.0 7 35.23933227391487 36.0 36.0 36.0 36.0 36.0 8 35.18663931306685 36.0 36.0 36.0 36.0 36.0 9 35.28590782427038 36.0 36.0 36.0 36.0 36.0 10 35.153962405530685 36.0 36.0 36.0 36.0 36.0 11 35.27791476094516 36.0 36.0 36.0 36.0 36.0 12 35.206461319699216 36.0 36.0 36.0 36.0 36.0 13 35.237960114910415 36.0 36.0 36.0 36.0 36.0 14 35.20337751880297 36.0 36.0 36.0 36.0 36.0 15 35.178275940701546 36.0 36.0 36.0 36.0 36.0 16 35.1944142220803 36.0 36.0 36.0 36.0 36.0 17 35.17623390568541 36.0 36.0 36.0 36.0 36.0 18 35.17222334417123 36.0 36.0 36.0 36.0 36.0 19 35.16160650099849 36.0 36.0 36.0 36.0 36.0 20 35.16113383332299 36.0 36.0 36.0 36.0 36.0 21 35.144998318393846 36.0 36.0 36.0 36.0 36.0 22 35.12603351593218 36.0 36.0 36.0 36.0 36.0 23 35.10071180748356 36.0 36.0 36.0 36.0 36.0 24 35.087028552526384 36.0 36.0 36.0 36.0 36.0 25 35.06664653745239 36.0 36.0 36.0 36.0 36.0 26 35.02372862868279 36.0 36.0 36.0 36.0 36.0 27 35.01203603182049 36.0 36.0 36.0 36.0 36.0 28 34.98864490998961 36.0 36.0 36.0 36.0 36.0 29 34.96580628766571 36.0 36.0 36.0 36.0 36.0 30 34.93681310538315 36.0 36.0 36.0 36.0 36.0 31 34.93458216137965 36.0 36.0 36.0 36.0 36.0 32 34.90850758343118 36.0 36.0 36.0 32.0 36.0 33 34.90232970625443 36.0 36.0 36.0 32.0 36.0 34 34.88727666353531 36.0 36.0 36.0 32.0 36.0 35 34.88146988581282 36.0 36.0 36.0 32.0 36.0 36 34.84241473110703 36.0 36.0 36.0 32.0 36.0 37 34.82380047733112 36.0 36.0 36.0 32.0 36.0 38 34.81547741608864 36.0 36.0 36.0 32.0 36.0 39 34.76970690256841 36.0 36.0 36.0 32.0 36.0 40 34.77384551117863 36.0 36.0 36.0 32.0 36.0 41 34.756255634171026 36.0 36.0 36.0 32.0 36.0 42 34.73841835752725 36.0 36.0 36.0 32.0 36.0 43 34.73518319231686 36.0 36.0 36.0 32.0 36.0 44 34.68525035776121 36.0 36.0 36.0 32.0 36.0 45 34.667621355252045 36.0 36.0 36.0 32.0 36.0 46 34.63499266298044 36.0 36.0 36.0 32.0 36.0 47 34.61487899351821 36.0 36.0 36.0 32.0 36.0 48 34.59548539136765 36.0 36.0 36.0 32.0 36.0 49 34.56720200101252 36.0 36.0 36.0 32.0 36.0 50 34.16158357898747 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 19.0 21 51.0 22 175.0 23 534.0 24 1187.0 25 2862.0 26 6144.0 27 11648.0 28 19862.0 29 31965.0 30 48440.0 31 72320.0 32 111087.0 33 189515.0 34 430567.0 35 1603936.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.5603279817484 18.0357939871067 12.485792820882606 25.918085210262298 2 15.95204651644414 19.434890969179534 38.279868563853796 26.333193950522528 3 19.32942683375535 22.699326130798838 27.947530601945292 30.023716433500518 4 13.181228604467895 15.99921432800146 34.38267443064469 36.43688263688596 5 14.910813581534022 36.196517591859994 33.1310530929314 15.76161573367458 6 35.41420732201327 34.07216097600496 16.406534364298516 14.107097337683253 7 31.44409855041993 29.4577086920661 19.528446808485413 19.56974594902856 8 27.87660370095628 34.5420478603686 18.243905215113195 19.33744322356193 9 26.650118028596392 15.435445096053108 18.772059965561656 39.142376909788844 10 17.17659658975266 27.077024006892426 30.540545347120812 25.205834056234107 11 36.37956320922382 21.5843140726525 22.101284462551956 19.93483825557173 12 24.718385310310676 23.393967321906842 28.597145261131107 23.290502106651374 13 30.177341275941888 19.82248088086917 24.636498401980145 25.3636794412088 14 23.12933665676146 19.68372367278592 25.059172381031797 32.127767289420824 15 25.013091234741548 27.72456753476538 21.747574120101063 25.51476711039201 16 25.384203150453978 26.023494428728274 24.02025528968479 24.572047131132962 17 24.0370087724117 26.581628640499478 25.12991444952198 24.251448137566843 18 24.504784781651605 25.616464992091892 26.118418504580852 23.76033172167565 19 25.769833764043188 25.205715168719834 25.033879127493414 23.990571939743567 20 25.852632344403514 25.002183526056676 25.14102021451118 24.004163915028627 21 25.73676510225197 24.693694626525204 24.70851489812743 24.861025373095398 22 25.933647101412905 24.85552216933912 24.93049295365525 24.280337775592724 23 24.776648626773394 25.13158425146563 25.298361707896007 24.793405413864978 24 24.934750820060863 24.93111488756274 25.493064063549774 24.64107022882662 25 24.903579198637324 24.884648749266397 25.47034657740242 24.741425474693862 26 24.344358214240405 25.565040131493927 25.620566990487713 24.470034663777955 27 24.80129944295473 25.439046126668025 25.108099189231382 24.651555241145864 28 24.769858304723293 25.17700547249741 25.13301840224575 24.920117820533545 29 24.738105315907806 25.276537152942858 25.110549651801694 24.87480787934764 30 24.703552469750576 25.12204105764701 25.30929187731396 24.865114595288457 31 25.320760965746896 24.902946712874424 24.925196942194063 24.851095379184613 32 24.88870884875311 25.41263881753152 24.97103110303126 24.727621230684107 33 24.63570683603715 25.35459079931281 25.25302225694786 24.756680107702174 34 24.957544442481563 25.239646159555434 25.579804394194667 24.22300500376834 35 24.682154072577553 25.385268389614886 25.524342038181825 24.40823549962574 36 24.374869334243893 25.311196924014478 25.616653446947822 24.697280294793803 37 25.050656749391862 25.007143520540335 24.954737942468476 24.987461787599322 38 24.841531838475703 25.48488945464979 25.07711478276059 24.596463924113916 39 25.225763564981573 24.918883200503338 25.045864090531484 24.809489143983605 40 25.50137038273891 24.956141824239275 25.014355920112713 24.528131872909103 41 24.948227319218493 25.159230634250907 25.391456796290708 24.501085250239893 42 24.989220147317408 25.325875638244348 25.322634765943807 24.362269448494438 43 24.82851185121832 25.07256331900511 25.26464269284216 24.834282136934412 44 24.374076414668917 25.53500267367949 25.33984185571142 24.751079055940174 45 24.803981587568327 25.354520724656528 25.091068184252368 24.750429503522778 46 24.813476634287735 24.996146619735786 25.181899309395213 25.008477436581266 47 25.180058269954614 25.206695511822353 25.155555169126725 24.45769104909631 48 24.815459325168238 25.492045888844405 24.75910016635042 24.933394619636935 49 25.132093308919107 25.229357616870317 24.825993323107603 24.81255575110297 50 24.750876388685793 25.750532551862054 24.781189359238343 24.717401700213813 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 18.5 2 32.0 3 84.0 4 136.0 5 167.0 6 198.0 7 163.5 8 129.0 9 184.5 10 240.0 11 403.5 12 567.0 13 1177.5 14 1788.0 15 2283.0 16 2778.0 17 2925.0 18 3072.0 19 3068.0 20 3064.0 21 3829.0 22 4594.0 23 5866.5 24 7139.0 25 9703.0 26 12267.0 27 16480.0 28 20693.0 29 25858.0 30 31023.0 31 38733.0 32 46443.0 33 55478.0 34 64513.0 35 75214.5 36 85916.0 37 93834.5 38 101753.0 39 108321.5 40 114890.0 41 121203.0 42 127516.0 43 134732.0 44 141948.0 45 151912.0 46 161876.0 47 170536.5 48 179197.0 49 186870.0 50 194543.0 51 195375.5 52 196208.0 53 196060.0 54 195912.0 55 191608.5 56 187305.0 57 178705.0 58 170105.0 59 156050.5 60 141996.0 61 124838.0 62 107680.0 63 92929.0 64 78178.0 65 65947.5 66 53717.0 67 44717.5 68 35718.0 69 29168.5 70 22619.0 71 17877.5 72 13136.0 73 10864.5 74 8593.0 75 6755.0 76 4917.0 77 4082.0 78 3247.0 79 2758.5 80 2270.0 81 1765.5 82 1261.0 83 931.0 84 601.0 85 438.5 86 276.0 87 194.5 88 113.0 89 81.0 90 49.0 91 38.0 92 27.0 93 23.5 94 20.0 95 23.5 96 27.0 97 24.0 98 21.0 99 12.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.031142318419140037 2 0.004623922912486528 3 2.3712425192238607E-4 4 3.9520708653731014E-5 5 3.9520708653731014E-5 6 1.5808283461492406E-4 7 0.0 8 0.0 9 0.0 10 1.5808283461492406E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 6.718520471134272E-4 17 0.0 18 1.9760354326865508E-4 19 0.0 20 3.161656692298481E-4 21 3.9520708653731014E-5 22 0.0 23 3.9520708653731014E-5 24 7.508934644208892E-4 25 1.5808283461492406E-4 26 4.7424850384477214E-4 27 1.5808283461492406E-4 28 0.0011856212596119305 29 3.161656692298481E-4 30 9.089762990358132E-4 31 3.161656692298481E-4 32 7.508934644208892E-4 33 3.161656692298481E-4 34 0.0010275384249970063 35 1.9760354326865508E-4 36 3.161656692298481E-4 37 0.0021341182673014747 38 0.0 39 6.718520471134272E-4 40 1.5808283461492406E-4 41 0.0010670591336507374 42 0.005374816376907418 43 0.004544881495179067 44 0.003873029448065639 45 0.002845491023068633 46 0.0028850117317223635 47 0.0010670591336507374 48 0.004663443621140259 49 0.0039520708653731015 50 0.0019365147240328195 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2530319.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.38793343941144 #Duplication Level Percentage of deduplicated Percentage of total 1 63.65861969872284 28.893331937304385 2 16.927038547689364 15.365665978577528 3 7.459512371459147 10.157155530187618 4 3.848534446088913 6.98708101113463 5 2.329468392494438 5.286487817387516 6 1.4468776298396342 3.9402471334880818 7 0.9526695108309314 3.026779024314568 8 0.6722030038626551 2.4407924157672496 9 0.4891683774127383 1.9982107579206834 >10 2.092667292152014 15.945438097360757 >50 0.08473345414029997 2.587267877650868 >100 0.03684093349530401 2.8788210717870752 >500 0.0016663418117696582 0.4927213471189667 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5808283461492406E-4 2 0.0 0.0 0.0 0.0 1.5808283461492406E-4 3 0.0 0.0 0.0 0.0 1.5808283461492406E-4 4 0.0 0.0 0.0 0.0 1.9760354326865505E-4 5 0.0 0.0 0.0 0.0 1.9760354326865505E-4 6 0.0 0.0 0.0 0.0 2.7664496057611706E-4 7 0.0 0.0 0.0 0.0 2.7664496057611706E-4 8 0.0 0.0 0.0 0.0 2.7664496057611706E-4 9 0.0 0.0 0.0 0.0 2.7664496057611706E-4 10 0.0 0.0 0.0 0.0 2.7664496057611706E-4 11 0.0 0.0 0.0 0.0 2.7664496057611706E-4 12 0.0 0.0 0.0 3.9520708653731014E-5 4.3472779519104115E-4 13 0.0 0.0 0.0 1.1856212596119304E-4 5.532899211522341E-4 14 0.0 0.0 0.0 1.1856212596119304E-4 5.532899211522341E-4 15 0.0 0.0 0.0 1.5808283461492406E-4 7.113727557671582E-4 16 0.0 0.0 0.0 1.9760354326865505E-4 7.508934644208892E-4 17 0.0 0.0 0.0 2.3712425192238607E-4 7.508934644208892E-4 18 0.0 0.0 0.0 2.3712425192238607E-4 7.508934644208892E-4 19 0.0 0.0 0.0 3.161656692298481E-4 7.508934644208892E-4 20 0.0 0.0 0.0 4.3472779519104115E-4 7.508934644208892E-4 21 0.0 0.0 0.0 4.7424850384477214E-4 7.904141730746202E-4 22 0.0 0.0 0.0 5.532899211522341E-4 7.904141730746202E-4 23 0.0 0.0 0.0 7.904141730746202E-4 8.299348817283513E-4 24 0.0 0.0 0.0 9.484970076895443E-4 8.694555903820823E-4 25 0.0 0.0 0.0 0.0012646626769193924 8.694555903820823E-4 26 0.0 0.0 0.0 0.0018179525980716266 9.484970076895443E-4 27 0.0 0.0 0.0 0.0020550768499940125 0.0010275384249970063 28 0.0 0.0 0.0 0.002489804645185054 0.0010275384249970063 29 0.0 0.0 0.0 0.003082615274991019 0.0010275384249970063 30 0.0 0.0 0.0 0.0038730294480656393 0.0010275384249970063 31 0.0 0.0 0.0 0.006283792675943231 0.0010275384249970063 32 0.0 0.0 0.0 0.008496952360552168 0.0010670591336507374 33 0.0 0.0 0.0 0.010710112045161105 0.0010670591336507374 34 0.0 0.0 0.0 0.01367416519419093 0.0011461005509581994 35 0.0 0.0 0.0 0.016282531965337178 0.0011461005509581994 36 0.0 0.0 0.0 0.019760354326865504 0.0011461005509581994 37 0.0 0.0 0.0 0.026755519758575895 0.0011461005509581994 38 0.0 0.0 0.0 0.034264454402784784 0.0011461005509581994 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2535 0.0 26.739668 1 GGTATCA 1365 0.0 22.24998 1 GTAGGAC 1490 0.0 21.556494 3 TAGGACC 1065 0.0 21.276451 4 TAGGACG 1040 0.0 19.249508 4 TGTAGGA 1740 0.0 18.713274 2 CTGTAGG 1760 0.0 18.381796 1 GTCCTAC 1465 0.0 17.876915 1 ATTTCGT 615 0.0 17.529392 42 GGACGTG 1155 0.0 17.523361 6 AGGACGT 1145 0.0 17.292133 5 TATCAAC 3910 0.0 17.161703 2 ATCAACG 3995 0.0 16.740496 3 GTCCTAA 625 0.0 16.550117 1 GATTTCG 680 0.0 16.500555 41 TCAACGC 4095 0.0 16.277971 4 TTAGGAC 800 0.0 15.949591 3 ATATGGC 2580 0.0 15.945328 15 CAACGCA 4195 0.0 15.942381 5 CGGATCG 235 3.6379788E-12 15.914801 26 >>END_MODULE