Basic Statistics
Measure | Value |
---|---|
Filename | SRR4061952_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1185003 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 1768 | 0.149197934519997 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATTAG | 35 | 0.0021776326 | 16.276918 | 1 |
GGTATCA | 565 | 0.0 | 15.292622 | 1 |
CGATTTA | 45 | 6.760187E-4 | 14.777909 | 18 |
GCGTTAT | 55 | 1.968531E-4 | 13.810719 | 1 |
GTCCTAA | 125 | 7.2759576E-12 | 13.672611 | 1 |
GACGCTC | 70 | 7.248873E-6 | 13.57327 | 8 |
CGACCAT | 185 | 0.0 | 13.353727 | 10 |
ATCGCCA | 165 | 0.0 | 12.66678 | 16 |
GTATAGG | 100 | 1.4514626E-7 | 12.343328 | 1 |
TCGATTT | 85 | 3.944404E-6 | 12.293187 | 17 |
AACCGCG | 70 | 1.0895254E-4 | 12.215427 | 7 |
CTAAGGT | 70 | 1.091246E-4 | 12.213363 | 4 |
CGGTTTC | 55 | 0.0030645856 | 12.09255 | 13 |
TAGGACT | 110 | 3.814057E-8 | 12.089995 | 4 |
CGCATCG | 170 | 1.8189894E-12 | 11.736885 | 13 |
ACTCTAA | 195 | 0.0 | 11.694388 | 10 |
AATCGAT | 65 | 8.0203416E-4 | 11.692411 | 15 |
GTAGGGA | 65 | 8.040266E-4 | 11.688954 | 3 |
CGTTATT | 65 | 8.048818E-4 | 11.687473 | 2 |
GTATCAA | 1410 | 0.0 | 11.649733 | 1 |