##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4061951_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 660252 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.329430278136225 32.0 32.0 32.0 32.0 32.0 2 31.505290404269886 32.0 32.0 32.0 32.0 32.0 3 31.593435536734457 32.0 32.0 32.0 32.0 32.0 4 31.665818505661473 32.0 32.0 32.0 32.0 32.0 5 31.643590629032552 32.0 32.0 32.0 32.0 32.0 6 35.289669701871404 36.0 36.0 36.0 36.0 36.0 7 35.30321453020968 36.0 36.0 36.0 36.0 36.0 8 35.25064823733968 36.0 36.0 36.0 36.0 36.0 9 35.33743176847628 36.0 36.0 36.0 36.0 36.0 10 35.228685411024884 36.0 36.0 36.0 36.0 36.0 11 35.326155770826894 36.0 36.0 36.0 36.0 36.0 12 35.27756674724196 36.0 36.0 36.0 36.0 36.0 13 35.28688440171329 36.0 36.0 36.0 36.0 36.0 14 35.25798785918104 36.0 36.0 36.0 36.0 36.0 15 35.23904660644723 36.0 36.0 36.0 36.0 36.0 16 35.252129489952324 36.0 36.0 36.0 36.0 36.0 17 35.242299909731436 36.0 36.0 36.0 36.0 36.0 18 35.2319205394304 36.0 36.0 36.0 36.0 36.0 19 35.2284037004053 36.0 36.0 36.0 36.0 36.0 20 35.22313298558732 36.0 36.0 36.0 36.0 36.0 21 35.22053852165537 36.0 36.0 36.0 36.0 36.0 22 35.19762302878295 36.0 36.0 36.0 36.0 36.0 23 35.180306913118024 36.0 36.0 36.0 36.0 36.0 24 35.16225168572 36.0 36.0 36.0 36.0 36.0 25 35.14943536710226 36.0 36.0 36.0 36.0 36.0 26 35.105948940707485 36.0 36.0 36.0 36.0 36.0 27 35.0947304968406 36.0 36.0 36.0 36.0 36.0 28 35.081614292724595 36.0 36.0 36.0 36.0 36.0 29 35.06396042723082 36.0 36.0 36.0 36.0 36.0 30 35.0509593306798 36.0 36.0 36.0 36.0 36.0 31 35.0448253091244 36.0 36.0 36.0 36.0 36.0 32 35.026383865554365 36.0 36.0 36.0 36.0 36.0 33 35.000773946917235 36.0 36.0 36.0 36.0 36.0 34 34.982400659142264 36.0 36.0 36.0 36.0 36.0 35 34.97793569727922 36.0 36.0 36.0 36.0 36.0 36 34.95245906108577 36.0 36.0 36.0 36.0 36.0 37 34.9500372585013 36.0 36.0 36.0 36.0 36.0 38 34.94359577858151 36.0 36.0 36.0 36.0 36.0 39 34.91940198590841 36.0 36.0 36.0 36.0 36.0 40 34.90318999412346 36.0 36.0 36.0 36.0 36.0 41 34.88460163695074 36.0 36.0 36.0 36.0 36.0 42 34.866222290882874 36.0 36.0 36.0 32.0 36.0 43 34.854167802596585 36.0 36.0 36.0 36.0 36.0 44 34.82038070312547 36.0 36.0 36.0 32.0 36.0 45 34.80136220715727 36.0 36.0 36.0 32.0 36.0 46 34.78206502971592 36.0 36.0 36.0 32.0 36.0 47 34.76142745497174 36.0 36.0 36.0 32.0 36.0 48 34.740970114441154 36.0 36.0 36.0 32.0 36.0 49 34.71732005355531 36.0 36.0 36.0 32.0 36.0 50 34.3356263971938 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 14.0 22 36.0 23 101.0 24 254.0 25 639.0 26 1481.0 27 2755.0 28 4760.0 29 7774.0 30 11536.0 31 17207.0 32 25703.0 33 43448.0 34 99866.0 35 444673.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.254045209381246 18.246924428822496 12.736652324101568 25.762378037694685 2 15.811204614163593 20.623330122321377 37.751201100225984 25.814264163289046 3 18.0888783205175 24.5064377032371 29.13422319693571 28.270460779309687 4 12.789056299715867 16.6874163198294 35.79739251073833 34.72613486971641 5 14.269724695608184 36.826449335177074 33.8993806900709 15.004445279143841 6 33.463536539189704 35.71919727375994 17.179098826202196 13.638167360848163 7 29.767573593112935 30.767949207272377 21.058777557659802 18.40569964195489 8 27.506921599631657 34.07729170074457 19.42349284818524 18.99229385143854 9 27.015896960554453 15.445011904545536 18.781616716041754 38.75747441885826 10 16.209138645757445 27.22146577589432 31.88469233670225 24.68470324164598 11 35.590501808400425 22.37433585964147 22.72389935963844 19.31126297231966 12 23.93510356651703 24.415677650351682 29.271399405075638 22.37781937805565 13 28.946977820589716 20.50504958712734 25.587957325384853 24.960015266898093 14 23.432568170940794 19.698387888260847 25.919951775988565 30.949092164809798 15 24.908065405330085 27.40665685223218 22.577440128920472 25.107837613517265 16 24.77326701481867 26.59318922586664 24.093976808714302 24.53956695060038 17 23.597959566953225 26.847476418094907 25.543731787256984 24.01083222769488 18 23.696139801378564 26.705298439532843 26.01768115459121 23.58088060449738 19 25.016357390814413 25.93100816052053 25.915862428284957 23.136772020380096 20 25.533207118515715 25.305566073457026 25.36978417266187 23.791442635365392 21 25.318363291591695 25.647480053070648 25.33411485311669 23.70004180222097 22 25.401513361564977 25.076788862434345 25.602345771008643 23.919352004992035 23 24.731920539430398 25.530403542889683 25.583262148391828 24.15441376928809 24 24.485116153676053 25.602426974188408 25.56395646471164 24.348500407423902 25 24.81344216063285 25.02003026121884 25.8968180282953 24.26970954985301 26 24.19852450053086 25.986026526275612 25.509692526024192 24.305756447169333 27 24.41378265808406 26.014085573646344 25.326012873911395 24.246118894358197 28 24.675043393180076 25.56592885638902 25.646505372272593 24.11252237815831 29 24.268759617598235 25.904508608886356 25.631883777005005 24.1948479965104 30 24.520631766437862 25.89239735612895 25.436353832825443 24.15061704460775 31 24.803104288085688 25.741388084477347 25.14615720153639 24.30935042590057 32 24.71351760696706 25.61756910261265 25.38099204846649 24.287921241953807 33 24.219425642672256 25.832902941457114 25.41972674028513 24.5279446755855 34 24.474439907428724 25.520410512413516 25.929044843755676 24.07610473640208 35 24.526090038348993 25.506473285957483 25.823170547003265 24.14426612869026 36 24.453996352907676 25.775461490461215 25.794696570400394 23.97584558623071 37 24.657019698837697 25.446427219110568 25.71920598810739 24.17734709394434 38 24.500342293548524 25.520407359614204 25.80620732689943 24.173043019937843 39 24.690645607849195 25.87671867758381 25.345553021146667 24.08708269342033 40 24.83937902309731 25.566527830367285 25.424914804998107 24.169178341537297 41 24.530099387198103 25.79962619993154 25.530181174895418 24.140093237974934 42 24.527844632901 25.774404476104067 25.48465125860134 24.213099632393593 43 24.46726171993923 25.352419871527864 25.53311694114547 24.647201467387436 44 24.2355991839121 25.57272315566104 25.744786231318812 24.446891429108046 45 24.51097254176139 25.734014500809554 25.424581098662756 24.330431858766296 46 24.46701199563795 25.27883799830365 25.727614200896642 24.52653580516176 47 24.43309180792672 25.750929953593193 25.68837770050042 24.127600537979667 48 24.165371671255947 26.026378526401245 25.343135918477387 24.465113883865417 49 24.573403652688626 25.525198947027228 25.474307282657755 24.42709011762639 50 24.356978198902826 25.729808161249967 25.51079755604763 24.402416083799576 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3.0 1 7.5 2 12.0 3 38.5 4 65.0 5 77.5 6 90.0 7 76.5 8 63.0 9 80.5 10 98.0 11 185.5 12 273.0 13 448.0 14 623.0 15 775.0 16 927.0 17 979.5 18 1032.0 19 1114.5 20 1197.0 21 1509.0 22 1821.0 23 2328.5 24 2836.0 25 3579.0 26 4322.0 27 5454.5 28 6587.0 29 8002.0 30 9417.0 31 11210.0 32 13003.0 33 15343.5 34 17684.0 35 20810.0 36 23936.0 37 25677.0 38 27418.0 39 30998.0 40 34578.0 41 37279.5 42 39981.0 43 41162.5 44 42344.0 45 43980.5 46 45617.0 47 47089.5 48 48562.0 49 49279.5 50 49997.0 51 49522.5 52 49048.0 53 48444.5 54 47841.0 55 45949.0 56 44057.0 57 41360.0 58 38663.0 59 35085.0 60 31507.0 61 27739.5 62 23972.0 63 20505.5 64 17039.0 65 14768.5 66 12498.0 67 10391.0 68 8284.0 69 6989.5 70 5695.0 71 4592.0 72 3489.0 73 2877.0 74 2265.0 75 1854.0 76 1443.0 77 1186.5 78 930.0 79 733.5 80 537.0 81 408.0 82 279.0 83 178.0 84 77.0 85 68.0 86 59.0 87 39.5 88 20.0 89 31.5 90 43.0 91 25.0 92 7.0 93 4.0 94 1.0 95 3.5 96 6.0 97 5.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0321089523394098 2 0.0036349757365369585 3 1.514573223557066E-4 4 0.0 5 1.514573223557066E-4 6 3.029146447114132E-4 7 0.0 8 0.0 9 0.0 10 1.514573223557066E-4 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 6.058292894228264E-4 17 0.0 18 1.514573223557066E-4 19 0.0 20 3.029146447114132E-4 21 0.0 22 0.0 23 0.0 24 9.087439341342396E-4 25 1.514573223557066E-4 26 1.514573223557066E-4 27 3.029146447114132E-4 28 0.001514573223557066 29 6.058292894228264E-4 30 0.0012116585788456528 31 6.058292894228264E-4 32 3.029146447114132E-4 33 1.514573223557066E-4 34 6.058292894228264E-4 35 0.0 36 0.0 37 0.001514573223557066 38 0.0 39 9.087439341342396E-4 40 3.029146447114132E-4 41 9.087439341342396E-4 42 0.005301006282449732 43 0.004695176993026904 44 0.004392262348315492 45 0.001968945190624186 46 0.0018174878682684793 47 6.058292894228264E-4 48 0.002726231802402719 49 0.003937890381248372 50 0.001514573223557066 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 660252.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.72148562519714 #Duplication Level Percentage of deduplicated Percentage of total 1 53.96470215081012 17.65805225695778 2 15.793470535027229 10.33571638167736 3 8.272056536047298 8.120219371052691 4 5.386785009957281 7.050544330773784 5 3.56003312995563 5.8244786443534355 6 2.564044423867986 5.033960565477791 7 1.9078572542938443 4.369954660491287 8 1.4407150624965193 3.771386976598788 9 1.1690276740241345 3.442709000793452 >10 5.814536380752143 31.309509969363162 >50 0.11237650548288414 2.410492976391034 >100 0.01439533728497186 0.672974866069508 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 1.514573223557066E-4 0.0 16 0.0 0.0 0.0 4.543719670671198E-4 0.0 17 0.0 0.0 0.0 4.543719670671198E-4 0.0 18 0.0 0.0 0.0 7.57286611778533E-4 0.0 19 0.0 0.0 0.0 7.57286611778533E-4 0.0 20 0.0 0.0 0.0 0.0010602012564899462 0.0 21 0.0 0.0 0.0 0.0012116585788456528 0.0 22 0.0 0.0 0.0 0.0012116585788456528 0.0 23 0.0 0.0 0.0 0.0013631159012013594 0.0 24 0.0 0.0 0.0 0.0016660305459127727 0.0 25 0.0 0.0 0.0 0.0021204025129798925 0.0 26 0.0 0.0 0.0 0.002726231802402719 0.0 27 0.0 0.0 0.0 0.003029146447114132 0.0 28 0.0 0.0 0.0 0.0033320610918255453 0.0 29 0.0 0.0 0.0 0.004846634315382611 0.0 30 0.0 0.0 0.0 0.0065126648612953844 0.0 31 0.0 0.0 0.0 0.009541811308409516 0.0 32 0.0 0.0 0.0 0.012570957755523648 0.0 33 0.0 0.0 0.0 0.017266134748550554 0.0 34 0.0 0.0 0.0 0.02180985441922175 0.0 35 0.0 0.0 0.0 0.027110860701671482 0.0 36 0.0 0.0 0.0 0.033169153595899746 0.0 37 0.0 0.0 0.0 0.04331679419373209 0.0 38 0.0 0.0 0.0 0.05770523981752422 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATAG 25 0.00235238 35.19891 22 GTATCAA 665 0.0 30.439758 1 GGATCGT 30 0.005744019 29.332426 6 GCTAACG 30 0.005744019 29.332426 20 ATATATC 45 0.0013977952 24.443686 3 CGTAATG 45 0.0013977952 24.443686 26 GGTATCA 240 0.0 22.919428 1 TAGACGA 50 0.0025796737 21.99932 9 CGTGACT 50 0.0025796737 21.99932 14 CTAAACC 50 0.0025796737 21.99932 4 GTCCGAC 60 2.8714674E-4 21.99932 12 AACGTAA 55 0.0044822977 19.99938 24 TAACGCC 55 0.0044822977 19.99938 4 TCGACAG 55 0.0044822977 19.99938 25 GTATTAT 105 1.7881139E-6 18.859415 1 CAAGATA 70 8.119681E-4 18.856558 4 ATTATAC 70 8.119681E-4 18.856558 3 CGCAAAA 70 8.119681E-4 18.856558 12 TATCAAC 1065 0.0 18.797539 2 GCGGCAA 95 1.5957477E-5 18.525742 22 >>END_MODULE