SRR3560103.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560103.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1519903
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38245	2.5162789993835135	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17544	1.1542841878725154	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14474	0.9522976137292973	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5636	0.370813137417322	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2788	0.18343275853788038	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2728	0.1794851381963191	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2716	0.17869561412800686	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2080	0.13685083850745738	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2074	0.13645607647330124	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1954	0.1285608357901787	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1887	0.12415265974210198	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1764	0.11606003804190135	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1758	0.11566527600774523	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	1626	0.10698051125631043	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	405	65.194145	1
TACAACG	320	61.354183	2
TAACGCA	445	56.152554	4
GTATCAA	18345	55.706757	1
GTATAAC	540	47.784348	1
ACAACGC	445	46.793797	3
TATCACG	290	45.134113	2
TATCAAC	22960	44.67305	2
ATCAACG	23325	44.07601	3
TCAACGC	24120	43.239914	4
AAACGCA	665	42.94232	5
AACGCAG	25340	42.84717	6
CAACGCA	24475	42.732876	5
GACCGTT	350	42.495007	7
GGTTTCA	860	41.866215	1
AGATTAC	885	41.007828	2
ACGCATA	180	40.005493	1
ATAACGC	680	39.371666	3
GTACAAC	565	39.297436	1
ACGCAGA	27825	39.04195	7