SRR3560096.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560096.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5134519
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	134661	2.622660467319334	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	60293	1.1742677356924767	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42283	0.8235045970226227	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18351	0.3574044618395608	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11076	0.2157164088788064	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10171	0.1980906098506988	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8284	0.1613393581755175	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8065	0.1570741095709257	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7534	0.14673234240636757	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	7011	0.13654638341001368	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6641	0.1293402556305664	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6363	0.12392592178546813	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5387	0.10491732526454767	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5182	0.10092474095431334	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	960	58.729706	1
GTATCAA	59040	56.169613	1
TATCAAC	74530	44.48306	2
ATCAACG	76115	43.43168	3
TCAACGC	77560	43.236233	4
CAACGCA	78245	42.989574	5
AACGCAG	80170	42.82556	6
TATCACG	920	40.744347	2
TAACGCA	895	39.223255	4
ACGCAGA	88245	38.913483	7
CGCAGAG	89305	38.531544	8
TACAACG	1235	37.57875	2
GACCGTT	1020	37.328773	7
GCAGAGT	92760	37.051476	9
ACAACGC	1260	36.360916	3
GTATCAC	1395	33.966755	1
AGATTAC	2090	33.87781	2
GGTATCA	31530	32.96672	1
CATGGGT	7330	32.874996	4
TAGTACT	1740	32.823574	5