SRR3560091.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560091.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3818344
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102264	2.678229096173629	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45269	1.1855663083263321	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32776	0.8583825867967894	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14034	0.36754153109306026	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8419	0.22048825354656362	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7032	0.1841636060030212	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6231	0.16318592562639722	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6225	0.16302878944380075	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5715	0.14967221392310384	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5450	0.14273203252509464	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5278	0.13822746195733018	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4815	0.12610178653363865	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4727	0.1237971225222243	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4414	0.11559985166344362	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4248	0.11125241727827562	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4039	0.10577884025116646	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	845	56.794052	1
GTATCAA	46125	55.222134	1
TATCAAC	57965	43.94314	2
ATCAACG	58855	43.25841	3
TCAACGC	60460	42.818615	4
AACGCAG	62255	42.774208	6
CAACGCA	60820	42.73678	5
TATCACG	685	42.561523	2
TAACGCA	910	40.537964	4
AGATTAC	1890	39.98099	2
ACGCAGA	68530	38.953053	7
CGCAGAG	69400	38.67048	8
ACAACGC	955	38.004772	3
ATAGTAC	1300	37.988	4
TCACGCA	815	37.232674	4
GCAGAGT	72100	37.156334	9
TAGTACT	1335	36.988182	5
GTATAAC	1155	36.3568	1
GCATAGT	1440	34.707912	2
TACAACG	1030	34.65977	2