SRR3560089.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560089.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3461060
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88903	2.568663935326172	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39506	1.1414422171242338	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28083	0.8113988200146777	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12367	0.35731827821534445	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9649	0.27878742350609353	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7083	0.20464828694099496	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6522	0.18843937984316944	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5876	0.16977457773052185	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4877	0.14091058808573095	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4864	0.14053498061287584	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4614	0.13331175998104627	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4536	0.13105811514391547	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4000	0.11557153010927287	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3530	0.10199187532143332	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	800	60.73152	1
GTATCAA	42100	52.972004	1
TAACGCA	850	44.798637	4
TATCAAC	52745	42.290024	2
ATCAACG	53775	41.44681	3
TCAACGC	54800	41.323013	4
CAACGCA	55475	40.988853	5
AACGCAG	56885	40.935062	6
TAGTACT	1280	40.43726	5
TACAACG	780	38.13987	2
ATAGTAC	1340	37.74139	4
TATCACG	605	37.370766	2
ACGCAGA	62375	37.370274	7
CGCAGAG	62975	37.09925	8
GCAGAGT	65490	35.592773	9
GTATAAC	1260	33.79924	1
GCATAGT	1480	33.769245	2
AGATTAC	1605	31.880653	2
CATGGGT	4985	31.39022	4
CATGGGG	10790	30.438372	4