SRR3560080.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560080.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3636955
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98601	2.7110866095401236	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44876	1.2338893387462864	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33915	0.93251085042295	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13726	0.3774036247355274	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9398	0.2584029772158303	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6808	0.18718955829808176	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6782	0.18647467455605032	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5951	0.16362589033958352	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5037	0.13849497725432403	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4931	0.13558045122911885	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4686	0.1288440467368994	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4333	0.11913812516239546	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3942	0.10838737350338401	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3913	0.10759000317573356	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3655	0.10049615681249836	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	690	66.93568	1
GTATCAA	46125	52.30241	1
TAACGCA	775	49.133884	4
TATCACG	725	43.495132	2
TATCAAC	56865	42.459007	2
ATCAACG	57800	41.741283	3
TCAACGC	59135	41.38252	4
CAACGCA	59365	41.24885	5
AACGCAG	60640	41.176247	6
TACAACG	770	40.18051	2
GTATAAC	1090	39.070404	1
ACGCAGA	66345	37.590668	7
CGCAGAG	67015	37.330257	8
ATAACGC	1070	37.2558	3
TAGTACT	1255	36.975822	5
ACAACGC	885	36.303905	3
GCAGAGT	69805	35.787086	9
AGATTAC	1715	35.039677	2
ATAGTAC	1380	34.491627	4
GTATCAC	1200	34.48926	1