SRR3560066.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560066.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2387559
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49805	2.086021748572496	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24312	1.0182785011804945	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17846	0.7474579685779492	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7284	0.3050814660496348	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7202	0.3016469959485818	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4764	0.19953433611483526	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4526	0.18956599606543756	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3626	0.15187059251729487	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3399	0.14236297406681886	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3104	0.1300072584593721	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3049	0.1277036504647634	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2918	0.12221687505942261	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2664	0.11157839450250234	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAACGCA	575	54.839973	4
TATCACG	450	44.952686	2
CGCATAG	580	44.44903	1
GTATCAA	28115	43.545116	1
TACAACG	410	43.533806	2
GTATAAC	885	42.679478	1
ATAACGC	865	41.26904	3
TATCAAC	34540	35.329098	2
ATCAACG	34480	35.269787	3
TCAACGC	35005	35.21672	4
CAACGCA	35375	34.96464	5
AACGCAG	36270	34.8892	6
ACGCAGA	39740	31.842756	7
CGCAGAG	40265	31.56055	8
ATCACGC	665	31.31379	3
GCAGAGT	41875	30.289654	9
GTATCAC	975	29.516066	1
AGATTAC	1060	29.186813	2
TAGTACT	910	28.76619	5
TTCAACG	1460	28.525576	4