SRR3560065.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3560065.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3867586
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	74178	1.9179405448256355	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34182	0.8838071086202092	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24593	0.6358746773827395	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11177	0.28899163457515875	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10140	0.2621790439824738	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7965	0.2059424147258781	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	5502	0.1422592800780642	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5401	0.13964783200683836	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5288	0.13672611287764513	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5254	0.13584701154673742	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4766	0.12322932185606217	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	4424	0.11438659670399057	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4388	0.11345578353008827	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4320	0.11169758086827287	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	4164	0.10766405711469636	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	705	44.253975	1
GTATCAA	44035	44.158985	1
TACAACG	670	40.850845	2
TAACGCA	670	37.298595	4
TATCAAC	53950	35.887573	2
ATCAACG	53985	35.853283	3
TCAACGC	55095	35.83292	4
AACGCAG	56665	35.80197	6
CAACGCA	55325	35.798088	5
ACAACGC	740	34.57441	3
ACGCAGA	61810	32.879604	7
CGCAGAG	62480	32.546066	8
GCAGAGT	64955	31.241842	9
TATCACG	535	28.915956	2
CATGGGG	11220	28.583403	4
CATGGGT	5110	27.828833	4
AGTACTT	36615	27.500992	12-13
GTACTGG	3210	27.475801	1
AAACGCA	1205	27.154581	5
ATAGTAC	1185	26.611877	4