SRR3559982.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559982.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3497976
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53956	1.5424920010886296	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26038	0.7443733175985198	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	21627	0.618271823477348	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19270	0.5508900003887962	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	14266	0.40783584564330916	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	10201	0.2916257858830364	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8508	0.24322636862002486	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8290	0.23699419321344686	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	8119	0.2321056519541586	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	7919	0.22638805983803204	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7768	0.22207127779035646	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	5534	0.15820577385322254	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	5152	0.14728517291142076	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	4898	0.14002383092394002	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4164	0.11904026785775546	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3917	0.11197904159433913	No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	3875	0.11077834724995254	No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC	3863	0.11043529172298494	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	805	57.117496	1
TAACGCA	795	48.648777	4
TATCACG	535	47.82339	2
TACAACG	790	45.19078	2
GTATAAC	1115	40.1662	1
AGATTAC	1550	39.155624	2
TAGTACT	1205	38.512547	5
ACAACGC	1040	34.32761	3
ATAGTAC	1395	33.69602	4
ATCACGC	760	33.66515	3
GTACAAC	1315	31.332687	1
GATTACT	1975	31.031002	3
CATGGGT	4210	30.66926	4
CATGGGG	9425	29.734814	4
TACTGGT	1915	29.517563	2
GTATCAC	1295	29.51104	1
TCACGCA	890	29.41632	4
GCATAGT	1635	28.38589	2
GTACTGG	2480	27.68984	1
AAACGCA	1335	27.631538	5