SRR3559981.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559981.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4749272
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	116729	2.457829326263057	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55231	1.1629361300005558	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38604	0.8128403679553413	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17091	0.3598656804663957	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16868	0.35517022398380216	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	12260	0.25814482724931315	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10703	0.2253608553058237	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8995	0.1893974487037171	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	8656	0.1822595126158283	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7561	0.15920334737618733	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7288	0.15345509796027687	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	6496	0.13677885789653657	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6106	0.12856707301666445	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	5670	0.11938671863814074	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	5244	0.11041692284628044	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	5101	0.10740593505699401	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4822	0.10153135048908549	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1200	65.19462	1
TACAACG	920	59.498936	2
TATCACG	760	54.018772	2
TAACGCA	1085	44.966938	4
ACAACGC	1200	44.6242	3
GTATCAA	65340	43.98131	1
ATAGTAC	2055	38.218296	4
GTACAAC	1605	37.95306	1
AGATTAC	2110	37.786053	2
TAGTACT	2105	36.744026	5
TCACGCA	1155	36.575104	4
TATCAAC	79320	36.20794	2
ATCAACG	80025	35.881523	3
AACGCAG	83500	35.847866	6
TCAACGC	81520	35.78549	4
CAACGCA	81785	35.755707	5
GCATAGT	2205	35.618412	2
GTATCAC	1530	34.348907	1
ACGCAGA	90420	33.124107	7
CGCAGAG	91285	32.875755	8