SRR3559952.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559952.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3773661
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46310	1.227190253708534	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22108	0.5858501863309926	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15127	0.400857416710192	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9252	0.24517305608532403	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7166	0.18989517076388154	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6302	0.1669996324524116	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4580	0.12136755262330136	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4540	0.12030757399777033	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	705	50.630924	2
TAACGCA	700	48.435883	4
CGCATAG	795	43.893993	1
GTATCAA	33950	40.458553	1
ACAACGC	905	37.46422	3
GTATAAC	935	37.321632	1
TCAACGC	41720	33.83326	4
ATCAACG	41010	33.809826	3
TATCAAC	41135	33.72646	2
CAACGCA	42020	33.662487	5
AACGCAG	43155	33.549023	6
ATAACGC	1225	32.047802	3
ACGCAGA	46665	31.038313	7
CGCAGAG	47435	30.710033	8
GCAGAGT	49800	29.287449	9
GTACAAC	1600	27.074268	1
CATGGGG	9285	26.265903	4
AGTACTT	27485	26.100088	12-13
TATCACG	515	25.413774	2
CGTATCA	460	24.850779	1