SRR3559949.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559949.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3947400
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97802	2.4776308456199017	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47359	1.1997517353194507	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33123	0.839109287125703	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13042	0.33039469017581197	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9489	0.24038607691138472	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8052	0.20398236814105486	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7247	0.18358919795308304	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5493	0.1391548867609059	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5482	0.13887622232355473	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5155	0.13059228859502459	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4871	0.12339767948523078	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4572	0.11582307341541268	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4375	0.11083244667375995	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4248	0.10761513907888737	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4151	0.10515782540406343	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	760	56.985863	1
GTATCAA	48900	55.23136	1
TATCAAC	61710	44.143517	2
ATCAACG	63130	43.06974	3
TCAACGC	64505	42.621414	4
CAACGCA	64820	42.478527	5
AACGCAG	65905	42.38391	6
TAACGCA	630	41.543533	4
TATCACG	720	38.834454	2
ACGCAGA	72025	38.799046	7
CGCAGAG	73145	38.351818	8
GCAGAGT	76090	36.87526	9
ACAACGC	915	35.10504	3
TAGTACT	1315	34.830223	5
ATAGTAC	1300	33.859432	4
AGATTAC	1790	33.56759	2
TACAACG	1005	32.557304	2
TCACGCA	890	32.080605	4
GGTATCA	26085	30.877203	1
GCATAGT	1465	30.0501	2