SRR3559946.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559946.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5575656
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114036	2.0452481286506914	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53237	0.9548114159123159	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36019	0.6460047033030731	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16453	0.29508635396444827	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11461	0.20555428814116222	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9267	0.16620465825007855	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9117	0.16351439184913846	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8959	0.16068064457348158	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6745	0.1209723124956059	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6172	0.11069549484401477	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	52190	51.912754	1
TATCAAC	65755	41.69687	2
ATCAACG	66695	41.031948	3
TCAACGC	67820	40.982758	4
AACGCAG	69540	40.773094	6
CAACGCA	68295	40.741264	5
TATCACG	870	40.34208	2
ACGCAGA	76475	37.021214	7
CGCATAG	1045	36.856964	1
CGCAGAG	77590	36.55852	8
GCAGAGT	81750	34.72	9
TAACGCA	900	34.365604	4
CGTATCA	705	31.584097	1
GGTATCA	29045	30.49947	1
TACAACG	960	30.363396	2
CATGGGG	14345	29.894955	4
TCACGCA	1235	29.859873	4
CATGGGT	6490	29.327057	4
AGTACTT	53165	28.24897	12-13
AGAGTAC	80060	27.22118	10-11