SRR3559928.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559928.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4423886
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98454	2.2255094276841674	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46408	1.049032456984651	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32294	0.7299916860425427	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18206	0.411538633680886	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16845	0.38077382645031993	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	14440	0.3264098577585408	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10527	0.23795821140056503	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	9601	0.21702638811217106	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8000	0.18083648629282037	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7882	0.17816914812000129	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7236	0.16356660185185604	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6766	0.15294245828215283	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	6013	0.13592122400984114	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	5238	0.11840268940022415	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5128	0.11591618771369787	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	5019	0.11345229058795818	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	4493	0.10156229161420526	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1370	68.11241	1
TATCACG	785	62.148907	2
TAACGCA	1000	56.521404	4
TACAACG	1020	51.330067	2
TAGTACT	2120	45.183445	5
ATCACGC	1130	44.753788	3
ATAGTAC	2195	43.63959	4
TCACGCA	1150	43.458103	4
GTATCAC	1435	42.934612	1
GTATCAA	56910	41.948402	1
GCATAGT	2340	40.172657	2
AGATTAC	2750	39.808376	2
ACAACGC	1390	38.522728	3
GTATAAC	1535	37.409775	1
GATTACT	3020	36.249348	3
TATCAAC	68775	34.490936	2
GTACAAC	1630	34.12853	1
ATCAACG	69575	34.05159	3
AACGCAG	73840	34.035057	6
TCAACGC	71370	33.987118	4