SRR3559906.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559906.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4462460
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	117797	2.6397323449397865	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58386	1.3083814756882977	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41387	0.9274480891705471	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	19505	0.4370907526341973	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17779	0.3984125347902278	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	15550	0.34846250722695554	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	10851	0.24316184346750447	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8853	0.19838833289261976	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8467	0.18973839541418858	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	6965	0.15607983040744342	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	6963	0.15603501207853965	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	6904	0.15471287137587786	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6651	0.14904335276954864	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	6377	0.14290324170972962	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6354	0.14238783092733603	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	6163	0.13810768051702424	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5562	0.1246397726814358	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	5449	0.12210753709837176	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1235	75.55855	1
TATCACG	955	64.79524	2
TACAACG	995	59.79847	2
TAACGCA	975	48.820087	4
TCACGCA	1260	48.638466	4
TAGTACT	2060	45.9223	5
ATAGTAC	2060	45.34669	4
AGATTAC	2375	43.340675	2
GTATCAA	71655	43.20895	1
ATCACGC	1415	42.890087	3
GTATCAC	1705	42.450905	1
GCATAGT	2245	41.34485	2
GGTTTCA	2715	40.318764	1
ACAACGC	1520	39.92728	3
GTACAAC	1680	39.522068	1
AGTGTAC	2410	36.292213	3
AAACGCA	1765	35.394703	5
TATCAAC	87265	35.352634	2
ATCAACG	88660	34.71586	3
TCAACGC	91145	34.552715	4