SRR3559900.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559900.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4604589
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	160466	3.484914723116439	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	79869	1.7345522043335462	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53780	1.1679652624805386	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28747	0.6243119635650435	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21554	0.4680982385181392	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16461	0.3574911897674255	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14589	0.316836095469107	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	12655	0.2748345183468058	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12465	0.27070820001524565	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11611	0.2521614849881281	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	9331	0.20264566500940692	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6458	0.14025138834323758	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5956	0.12934922096195775	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	5941	0.12902345898841353	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	5901	0.1281547603922956	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	5677	0.12329004825403526	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	5081	0.11034643917187832	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	5000	0.10858732451473954	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1220	67.70865	1
TACAACG	900	55.530502	2
TATCACG	765	54.44167	2
TAACGCA	1050	50.43076	4
GTATCAA	72740	49.423885	1
ATAGTAC	1785	46.33097	4
AGATTAC	2390	43.813663	2
TAGTACT	1970	43.489223	5
GGTTTCA	2595	43.134933	1
AGTGTAC	2350	41.774467	3
GCATAGT	2060	40.434834	2
TATCAAC	90875	39.485687	2
ACAACGC	1335	39.218975	3
ATCAACG	92590	38.664352	3
AACGCAG	97475	38.60581	6
TCAACGC	95130	38.513855	4
CAACGCA	95710	38.372875	5
TCAAACG	745	38.333614	3
TCACGCA	1090	38.20906	4
GTACAAC	1475	38.14703	1