SRR3559891.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559891.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5287234
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	197339	3.732367434465734	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98638	1.8655879425801845	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64645	1.2226619816713238	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34371	0.6500752567410484	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22975	0.43453722683732177	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17532	0.33159114955002933	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16530	0.31263984155042124	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16031	0.30320201451269224	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14246	0.26944145086069576	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	13456	0.2544998008410447	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	8845	0.1672897397769798	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	6614	0.12509376358224356	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6298	0.11911710357438313	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6227	0.11777424642071828	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	5785	0.10941448780212867	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	5710	0.1079959767243137	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	5685	0.10752313969837536	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1100	65.83739	1
GTATCAA	84110	54.0171	1
TACAACG	1095	53.24921	2
TATCACG	860	52.579487	2
AGATTAC	2640	43.271156	2
TCACGCA	1045	43.27075	4
TATCAAC	106510	42.58863	2
GTACAAC	1565	42.45106	1
ATCAACG	108695	41.71022	3
TCAACGC	111355	41.30694	4
TAGTACT	1805	41.20232	5
CAACGCA	112820	40.848892	5
AACGCAG	115010	40.79012	6
GGTTTCA	2700	39.901447	1
GATTACT	2915	38.984493	3
ATAGTAC	1900	38.203514	4
ACGCAGA	125645	37.33751	7
CGCAGAG	126605	37.111134	8
TAACGCA	1220	36.576195	4
GTATCAC	1615	36.318966	1