SRR3559856.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559856.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3487564
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67084	1.9235202565458298	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32456	0.9306209147703095	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22968	0.6585685596020604	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16029	0.4596044689072373	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12695	0.3640076569204178	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8172	0.23431828061076443	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6753	0.1936308552330509	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5835	0.16730875763140116	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4885	0.14006911414385514	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4674	0.1340190459587265	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4028	0.1154960883871952	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	885	58.779633	1
TAACGCA	790	57.236286	4
GTATCAA	31720	49.990932	1
TACAACG	840	46.039593	2
TATCACG	610	42.9161	2
GTATAAC	1155	41.415115	1
TATCAAC	39405	39.997055	2
ATCAACG	39735	39.633797	3
TCAACGC	40820	39.396534	4
CAACGCA	41515	38.994957	5
AACGCAG	42970	38.629917	6
ATAACGC	1400	37.397243	3
ACGCAGA	46940	35.350075	7
TAGTACT	1560	35.08716	5
ACAACGC	1090	34.933205	3
CGCAGAG	47815	34.915215	8
ATAGTAC	1550	34.161995	4
GCAGAGT	49995	33.29755	9
GCATAGT	1685	32.485184	2
GGTATCA	18215	30.92236	1