SRR3559849.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559849.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2863437
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98195	3.4292704885771887	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44931	1.5691282888361084	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31009	1.0829293607647035	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16390	0.5723890555301199	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13247	0.46262585836531417	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8766	0.30613559858310135	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7634	0.266602687609331	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7281	0.25427484522970123	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6588	0.23007316033144787	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5360	0.1871876349994779	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4314	0.15065810772159471	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3714	0.1297042679828472	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3695	0.12904072972445352	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3625	0.1265961150882663	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	870	61.873016	1
GTATCAA	38725	58.520927	1
TACAACG	665	56.36779	2
TAACGCA	740	52.26019	4
TATCAAC	49280	45.988834	2
ATAGTAC	1175	45.57157	4
ATCAACG	50375	45.057686	3
TCAACGC	51915	44.5004	4
GTATCAC	810	44.30414	1
GTATAAC	830	43.957176	1
CAACGCA	52740	43.871975	5
GCATAGT	1225	43.7138	2
AACGCAG	54115	43.63679	6
TAGTACT	1250	42.837276	5
AGATTAC	1515	42.8081	2
GTACAAC	955	42.587643	1
TCACGCA	705	41.351986	4
TATCACG	635	41.227886	2
ACAACGC	900	40.325214	3
ACGCAGA	59415	39.714214	7