SRR3559843.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559843.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6414725
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	119474	1.8624960540007562	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58101	0.9057442057141967	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37169	0.5794324776198512	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	22987	0.3583473960302273	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22462	0.3501631013020823	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21736	0.3388453908780189	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	16199	0.25252836247851623	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14437	0.22506031045758002	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	12032	0.18756844603626813	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	11261	0.1755492246355066	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9253	0.14424624594195387	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	9155	0.14271851092603347	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9034	0.14083222585535624	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	8192	0.1277061760246932	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	7234	0.11277178678743048	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6915	0.10779885341928142	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	6882	0.10728441203636943	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1525	63.482998	1
TATCACG	1055	53.01158	2
TAACGCA	1430	48.679024	4
TACAACG	1350	41.42757	2
ATAGTAC	2485	40.701885	4
GTATCAA	79515	37.87858	1
TAGTACT	2710	37.322575	5
ATCACGC	1610	36.9544	3
TCACGCA	1600	35.69795	4
GCATAGT	2795	35.33635	2
AAACGCA	2205	34.80752	5
ACAACGC	1665	34.66167	3
CATGGGT	10260	34.097454	4
GTATAAC	2375	33.214108	1
AGATTAC	3020	32.70367	2
CATGGGG	16970	32.465427	4
GTATCAC	2280	31.190647	1
AACGCAG	101625	31.145813	6
TCAACGC	98135	31.138168	4
TATCAAC	96440	31.019405	2