SRR3559813.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559813.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4943013
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114116	2.3086324069954904	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54335	1.0992283451409088	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34101	0.6898828710343266	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	25425	0.514362393948792	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21135	0.42757322305241763	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19756	0.39967525879458543	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	18088	0.3659306580824287	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13329	0.26965334705775607	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	12702	0.2569687759267475	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	11563	0.23392614990088031	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	9522	0.19263554435321129	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	9000	0.18207518369868742	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8985	0.18177172505918962	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8651	0.17501471268637164	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	7676	0.15528990111901383	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	7333	0.1483508135624972	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6389	0.12925314985010153	No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC	6214	0.1257127990559604	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1380	66.25142	1
TACAACG	1095	55.419487	2
TATCACG	840	53.12005	2
TAACGCA	1195	49.78615	4
TAGTACT	2275	40.273167	5
GCATAGT	2270	39.837692	2
ATAGTAC	2280	39.66297	4
TCACGCA	1170	39.662968	4
AGATTAC	2535	37.55074	2
GGTTTCA	2820	36.87084	1
GTATAAC	1720	36.826485	1
GTATCAA	76900	36.032433	1
GTACAAC	1860	35.98222	1
ACAACGC	1675	35.163883	3
GTATCAC	1830	34.939407	1
ATCACGC	1375	33.74958	3
GATTACT	2850	33.19164	3
CATGGGT	7680	32.458565	4
CATGGGG	13450	32.113735	4
TATCAAC	90705	30.473648	2