SRR3559793.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559793.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1608096
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44562	2.7711032177183452	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21059	1.3095611207291107	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15436	0.9598929417149226	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8150	0.506810538674308	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7281	0.4527714763297714	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4596	0.28580383260700853	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4524	0.2813264879708674	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3306	0.20558474120948	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3129	0.19457793564563308	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3074	0.19115774182635864	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2451	0.15241627365530416	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2306	0.1433993990408533	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1936	0.12039082243846139	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1921	0.11945804230593197	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	1812	0.11267984000955167	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1788	0.11118739179750463	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	1735	0.1078915686625674	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	350	61.409046	1
GTATCAA	21025	48.78486	1
TAACGCA	345	46.563015	4
TCACGCA	385	43.27068	4
TATCAAC	26055	39.393215	2
ATCAACG	26455	38.72771	3
AACGCAG	28190	38.306988	6
TATCACG	435	38.29942	2
TCAACGC	27145	38.29125	4
CAACGCA	27500	37.948387	5
AAACGCA	660	37.861843	5
GTACAAC	475	36.4504	1
GGTTTCA	920	35.692158	1
AGATTAC	865	35.081448	2
ATCACGC	475	35.072025	3
ACGCAGA	31015	34.83698	7
CGCAGAG	31385	34.57794	8
ACAACGC	485	34.348892	3
GTATCAC	560	34.11614	1
GCAGAGT	32480	33.393894	9